genome.fa.s8449.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008449.1 Hibiscus syriacus cultivar Beakdansim tig00111254_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1344907

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 690 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1222858--1222937	22	3.6	21	78	9	70	61	2	0	36	1.10
1222880--1222943	22	2.9	21	81	9	74	65	4	0	29	1.13
1223299--1223541	113	2.2	113	87	3	346	30	17	12	39	1.87
1223449--1223614	73	2.3	73	93	2	289	31	17	15	34	1.91
1223336--1223727	186	2.1	185	87	2	572	31	17	14	36	1.90
1223522--1224117	112	5.3	112	93	1	980	28	19	14	37	1.91
1223291--1223839	298	1.8	299	90	1	879	30	18	13	37	1.90
1224129--1224310	77	2.4	76	88	5	262	34	19	20	25	1.97
1224982--1225190	22	9.5	22	90	2	330	40	12	13	33	1.83
1225562--1225711	54	2.9	54	77	7	136	29	20	14	36	1.91
1225623--1225711	46	1.9	46	86	0	124	26	21	13	38	1.91
1227775--1227994	114	1.9	114	91	0	359	30	20	15	34	1.93
1232174--1232215	7	6.0	7	78	10	50	54	14	16	14	1.71
1233655--1233711	13	4.4	13	82	6	62	75	0	1	22	0.90
1233655--1233699	22	2.0	22	87	8	65	77	0	0	22	0.76
1234469--1234502	17	2.0	17	88	11	52	64	0	5	29	1.17
1234505--1234540	16	2.2	16	90	9	56	63	0	0	36	0.94
1235807--1235859	3	19.0	3	81	14	51	64	1	0	33	1.05
1235807--1235859	19	2.8	19	79	0	61	64	1	0	33	1.05
1235807--1235859	14	3.9	14	73	14	56	64	1	0	33	1.05
1235785--1235864	22	3.6	21	75	9	61	60	2	0	37	1.11
1235807--1235870	22	2.9	21	77	9	65	64	4	0	31	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1238503--1238710	104	2.0	104	95	0	371	34	12	14	38	1.84
1240933--1241030	23	4.3	23	77	8	76	35	25	14	24	1.93
1240971--1241030	23	2.6	23	86	0	84	35	25	16	23	1.95
1241210--1241270	16	3.9	16	80	4	61	31	22	8	37	1.84
1242451--1242497	17	2.7	17	81	12	60	72	0	12	14	1.13
1242645--1242724	37	2.3	34	86	6	106	66	2	5	26	1.25
1242777--1242852	22	3.4	22	75	12	64	67	0	5	27	1.12
1244169--1244427	111	2.4	110	82	7	316	23	19	24	32	1.97
1245147--1245450	65	4.5	65	74	11	227	40	10	19	29	1.85
1245147--1245313	65	2.5	67	86	2	230	39	8	20	31	1.83
1245261--1245486	36	6.4	36	77	10	216	40	12	19	27	1.87
1245273--1245364	37	2.5	36	84	5	114	42	14	21	21	1.88
1245207--1245466	138	1.9	138	86	0	376	40	12	20	26	1.87
1245368--1245423	29	1.9	29	82	7	69	42	12	8	35	1.74
1245295--1245535	101	2.4	102	82	2	279	41	11	18	28	1.85
1247097--1247147	13	3.8	13	80	12	59	1	17	3	76	1.03
1250211--1250236	11	2.4	11	100	0	52	84	0	0	15	0.62
1250302--1250352	19	2.8	17	77	11	57	80	0	5	13	0.89
1250365--1250462	34	2.8	34	76	16	85	65	5	6	23	1.36
1250454--1250478	13	1.9	13	100	0	50	80	0	8	12	0.92
1250459--1250515	16	3.2	18	73	12	55	73	0	3	22	0.98
1250456--1250529	31	2.4	31	81	4	78	74	0	4	21	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1250477--1250552	30	2.5	31	79	8	77	71	0	3	25	1.03
1250527--1250586	17	3.2	17	70	20	57	63	1	5	30	1.25
1250617--1250664	25	1.9	25	87	8	71	58	0	4	37	1.18
1250631--1250673	14	2.9	14	79	6	50	62	0	4	32	1.15
1250652--1250701	25	2.1	24	81	7	57	72	0	6	22	1.07
1256160--1256189	15	2.0	15	93	0	51	36	13	3	46	1.60
1256167--1256216	16	3.2	16	88	2	66	30	18	6	46	1.73
1256944--1256985	21	2.0	20	82	13	50	30	21	9	38	1.85
1257098--1257169	23	3.1	23	95	0	126	33	37	0	29	1.58
1260141--1260500	182	2.0	181	89	3	546	32	14	13	39	1.85
1260332--1260594	125	2.1	125	91	0	418	31	15	14	39	1.87
1260786--1261255	200	2.4	198	84	3	599	30	15	14	39	1.87
1261550--1261755	80	2.6	79	79	5	207	47	16	13	23	1.81
1261608--1261781	81	2.2	81	89	1	269	40	13	13	32	1.83
1264000--1264027	9	3.1	9	100	0	56	35	42	0	21	1.53
1268183--1268230	3	16.0	3	100	0	96	66	0	0	33	0.92
1269606--1269685	3	27.0	3	78	12	85	63	1	2	32	1.15
1270083--1270486	122	3.3	120	87	4	514	25	19	15	39	1.90
1270783--1270843	22	2.8	22	87	0	77	36	13	11	39	1.80
1271203--1271578	54	7.0	54	93	1	641	25	24	14	35	1.94
1271203--1271578	161	2.3	160	90	4	628	25	24	14	35	1.94
1271203--1271578	107	3.5	108	94	1	650	25	24	14	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1271782--1271819	18	2.1	18	90	0	58	52	2	10	34	1.50
1284127--1284181	19	2.8	21	75	10	62	16	25	32	25	1.96
1284129--1284184	20	2.8	20	76	10	62	16	26	28	28	1.97
1290665--1290703	9	4.2	9	83	6	51	5	17	0	76	0.96
1290663--1290701	19	2.1	19	90	0	60	7	17	0	74	1.05
1303598--1303704	3	36.0	3	80	12	123	63	0	0	34	1.07
1303599--1303704	41	2.5	42	82	10	128	64	0	0	33	1.07
1304136--1304178	21	2.0	21	90	0	68	30	30	13	25	1.94
1309627--1309673	22	2.1	23	88	4	69	44	2	0	53	1.12
1309621--1309700	32	2.5	33	80	14	94	48	1	0	50	1.08
1309665--1309699	18	1.9	18	88	0	52	60	0	0	40	0.97
1309663--1309713	23	2.2	23	85	0	66	52	0	3	43	1.19
1311651--1311689	2	19.5	2	100	0	78	51	0	0	48	1.00
1312139--1312206	34	2.0	34	100	0	136	52	5	11	29	1.61
1313414--1313445	16	2.0	16	100	0	64	37	25	18	18	1.94
1315325--1315394	22	3.1	23	81	4	81	48	1	0	50	1.09
1315382--1315434	23	2.3	23	80	0	61	52	1	3	41	1.30
1317613--1317664	24	2.2	24	100	0	104	48	25	3	23	1.68
1329795--1329831	16	2.4	16	86	8	51	51	0	2	45	1.15
1329761--1329821	22	2.8	21	74	16	61	52	1	1	44	1.20
1329807--1329853	18	2.6	18	82	3	58	40	0	2	57	1.11
1330481--1330520	21	1.9	21	89	0	62	10	25	37	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1333425--1333479	27	2.0	27	100	0	110	30	7	25	36	1.83
1334659--1334711	26	2.0	26	100	0	106	18	9	26	45	1.80

Tables:   1   2   3   4   5   6

The End!