genome.fa.s8492.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008492.1 Hibiscus syriacus cultivar Beakdansim tig00111334_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1113585

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 597 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215226--215832	81	7.5	81	84	1	768	37	11	23	28	1.89
217340--217411	36	2.0	36	88	0	108	34	11	25	29	1.90
222326--222377	20	2.6	20	100	0	104	34	17	30	17	1.93
223286--223341	20	2.8	20	82	12	71	32	16	28	23	1.96
223363--223417	19	2.7	19	88	8	74	32	16	23	27	1.96
223766--223925	55	2.9	55	83	8	202	31	11	20	36	1.89
224107--225358	81	15.5	81	86	0	1567	35	11	24	28	1.90
227242--227325	25	3.4	25	96	0	159	46	3	9	40	1.54
228269--228326	21	2.6	23	75	13	66	32	31	17	18	1.94
229611--229640	15	2.0	15	100	0	60	26	13	13	46	1.80
233455--234060	81	7.5	81	85	1	784	37	11	23	28	1.89
238686--239288	81	7.5	81	84	1	764	37	11	23	28	1.89
238712--239320	321	1.9	322	87	2	911	37	11	23	27	1.89
240795--240866	36	2.0	36	88	0	108	34	11	25	29	1.90
245767--245818	20	2.6	20	100	0	104	34	17	30	17	1.93
244899--246781	962	2.0	957	97	0	3590	35	9	20	34	1.85
246726--246781	20	2.8	20	82	12	71	32	16	28	23	1.96
246803--246857	19	2.7	19	88	8	74	32	16	23	27	1.96
247205--247364	55	2.9	55	83	8	202	31	11	20	36	1.89
247563--248766	81	14.9	81	86	0	1514	35	11	24	28	1.90
250785--250868	25	3.4	25	94	0	150	45	4	9	40	1.58
251810--251867	21	2.6	23	75	13	66	32	31	17	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253157--253186	15	2.0	15	100	0	60	26	13	13	46	1.80
259111--259176	29	2.4	27	82	12	80	42	3	9	45	1.51
259513--259594	22	3.7	22	91	0	119	26	18	37	17	1.92
263263--263390	66	1.9	66	84	3	168	39	20	20	20	1.93
267424--267530	31	3.3	31	66	19	83	39	18	21	20	1.93
267428--267554	66	1.9	66	85	3	175	36	21	22	20	1.95
270915--270956	19	2.2	20	86	4	59	61	0	4	33	1.17
271228--271268	20	2.1	20	95	4	75	31	0	0	68	0.90
271249--271284	18	2.1	17	90	10	56	38	0	0	61	0.96
274050--274106	18	3.2	17	81	16	71	57	0	0	42	0.98
274051--274103	9	5.9	9	75	16	56	58	0	0	41	0.98
277535--277591	27	2.1	27	83	6	71	63	1	0	35	1.05
277534--277592	26	2.2	26	80	11	66	61	1	0	37	1.07
277650--277688	8	4.5	8	82	17	51	82	0	2	15	0.79
277641--277681	19	2.2	18	87	12	57	75	0	2	21	0.92
277699--277761	19	3.5	17	81	16	65	63	0	1	34	1.04
277715--277761	19	2.5	19	90	10	71	65	0	2	31	1.04
281265--281307	17	2.5	17	88	0	59	62	6	0	30	1.21
281323--281356	9	3.6	9	85	14	50	64	0	0	35	0.94
284218--284300	25	3.2	25	69	14	60	60	6	0	33	1.21
284213--284348	19	7.2	20	74	17	96	61	5	0	33	1.18
284233--284348	19	6.2	19	72	18	100	60	4	0	35	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284286--284321	9	3.8	9	86	13	54	63	0	0	36	0.94
285807--285864	26	2.2	27	81	6	75	17	17	50	15	1.79
287090--287172	9	9.1	9	68	21	57	60	3	1	34	1.22
287653--287700	23	2.1	23	100	0	96	18	12	0	68	1.20
290946--291003	18	3.3	18	76	11	66	62	0	0	37	0.96
290956--290999	19	2.7	15	75	24	52	61	0	0	38	0.96
294470--294518	2	24.5	2	100	0	98	51	0	0	48	1.00
296857--296903	23	2.0	24	84	12	62	29	21	25	23	1.99
298449--298487	19	2.2	18	86	9	53	69	2	0	28	1.02
305726--305772	23	2.0	24	84	12	62	29	21	25	23	1.99
307109--307149	2	20.5	2	100	0	82	51	0	0	48	1.00
307333--307371	19	2.2	18	86	9	53	69	2	0	28	1.02
310851--310881	2	15.5	2	93	0	53	51	3	0	45	1.17
310876--310927	27	2.0	27	84	3	70	59	3	1	34	1.27
321283--322065	134	5.9	131	82	6	787	29	24	16	29	1.96
322212--322240	15	1.9	15	100	0	58	41	0	0	58	0.98
330926--331606	134	5.1	133	82	5	788	28	24	18	28	1.98
339399--339613	33	6.6	33	80	6	188	28	16	25	29	1.96
339919--339997	2	39.5	2	92	0	131	49	2	1	46	1.23
343886--343938	20	2.7	20	87	0	79	35	16	16	30	1.92
345185--345309	32	3.9	33	74	13	111	30	17	26	25	1.97
350961--351042	40	2.0	40	85	0	110	26	25	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354287--354326	20	2.0	20	85	4	55	27	30	22	20	1.98
354933--355028	38	2.5	38	89	0	147	26	23	27	22	2.00
357024--357048	10	2.5	10	100	0	50	40	16	20	24	1.91
361119--361156	20	1.9	20	94	0	67	13	31	34	21	1.91
361782--361871	38	2.4	38	88	3	137	25	23	23	27	2.00
374109--374173	33	2.0	33	90	0	103	55	4	0	40	1.21
374646--374693	21	2.3	21	96	0	87	41	12	18	27	1.86
379297--379344	21	2.3	21	92	0	78	39	12	18	29	1.88
383117--383164	20	2.4	19	80	16	53	4	29	22	43	1.72
386005--386062	28	2.0	29	93	6	100	43	31	15	10	1.80
387546--387583	20	2.0	20	89	5	60	50	2	2	44	1.30
387743--387793	23	2.4	20	75	15	57	37	1	0	60	1.08
387812--387862	24	2.1	25	85	3	68	13	56	7	21	1.62
387911--387944	17	2.0	17	100	0	68	23	35	11	29	1.90
388627--388742	53	2.2	53	87	3	162	35	18	19	26	1.95
388762--388858	49	2.0	49	91	0	158	48	18	9	23	1.77
388881--388936	18	3.1	18	97	0	103	42	21	7	28	1.79
391724--391752	2	14.5	2	100	0	58	48	0	0	51	1.00
391885--391910	13	2.0	13	100	0	52	61	0	30	7	1.24
392883--392920	19	2.0	19	85	10	51	42	23	13	21	1.88
394730--394789	25	2.4	26	80	8	79	40	0	13	46	1.43
394760--395099	31	10.5	31	81	8	304	35	3	10	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394880--395100	97	2.3	99	77	13	239	37	3	9	49	1.53
395040--395114	31	2.4	31	84	0	87	40	4	6	49	1.48
396196--396243	18	2.7	18	100	0	96	31	22	27	18	1.97
405336--405390	16	3.7	15	80	7	67	58	1	0	40	1.09
405737--405776	19	2.1	19	85	0	53	30	22	22	25	1.99
406433--406491	31	1.9	31	89	0	91	49	13	3	33	1.59
424438--424476	20	2.0	20	89	0	60	5	28	5	61	1.39
441553--441614	30	2.1	28	88	5	88	33	8	25	32	1.85
441986--442034	20	2.5	20	93	0	89	22	40	18	18	1.91
443758--443803	21	2.1	22	84	11	60	28	13	4	54	1.57
449151--449458	57	5.4	58	80	8	282	30	10	17	41	1.83
449105--449398	114	2.6	113	79	7	319	30	10	17	41	1.83
449137--449398	57	4.6	58	84	7	317	30	11	17	40	1.84
451366--451412	20	2.3	20	92	0	76	21	23	23	31	1.98
453120--453330	108	2.0	108	81	11	254	14	16	18	50	1.78
455204--455252	23	2.2	24	89	10	77	57	4	0	38	1.18
455204--455262	23	2.7	23	80	17	72	55	3	0	40	1.16
455800--455896	40	2.3	41	79	13	101	35	12	1	51	1.46
457319--457489	59	2.9	59	76	3	166	35	9	22	31	1.87
457319--457583	118	2.3	117	81	0	305	36	10	21	31	1.87
457513--457624	59	1.9	59	81	7	138	35	10	18	34	1.86
457785--457818	17	1.9	18	88	5	52	38	8	17	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464111--464270	58	2.7	59	79	1	178	33	10	23	32	1.89
464578--464611	17	1.9	18	88	5	52	38	8	17	35	1.81
469007--469031	3	8.3	3	100	0	50	64	0	0	36	0.94
469025--469065	20	2.0	20	95	0	73	36	0	0	63	0.95
469028--469062	17	2.1	16	89	5	52	37	0	0	62	0.95
485305--485367	3	23.0	3	73	23	59	66	0	1	31	1.01
485301--485362	8	8.4	7	75	22	56	64	0	1	33	1.03
485293--485366	5	15.0	5	82	12	66	63	0	1	35	1.03
485315--485367	18	3.1	18	81	15	67	67	0	0	32	0.91
485615--486240	124	5.2	123	88	4	726	26	19	14	38	1.90

Tables:   1   2   3   4   5