genome.fa.s8492.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008492.1 Hibiscus syriacus cultivar Beakdansim tig00111334_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1113585

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 597 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
906378--906437	28	2.2	28	85	5	79	3	11	5	80	1.00
906379--906442	21	3.2	19	78	10	74	3	9	4	82	0.91
906378--906448	26	2.7	26	83	10	90	2	9	5	81	0.95
911162--911245	33	2.7	31	73	22	77	65	4	2	27	1.25
911348--911396	21	2.2	21	82	10	53	61	0	4	34	1.15
911879--911962	37	2.3	37	85	0	105	32	10	14	42	1.80
912537--912577	18	2.2	19	86	8	57	36	14	4	43	1.67
914254--914301	20	2.5	19	76	6	53	41	10	6	41	1.64
914985--915087	43	2.4	42	75	13	102	32	20	17	30	1.96
916476--916511	16	2.4	15	90	9	56	8	13	0	77	0.98
916478--916557	11	7.0	11	76	17	56	5	13	1	80	0.95
928196--928335	67	2.1	67	94	0	244	25	23	13	37	1.91
935376--936144	244	3.0	262	90	7	1165	40	11	8	38	1.73
935909--935955	20	2.5	19	82	6	60	38	14	6	40	1.72
940518--940556	20	2.0	20	84	0	51	35	25	10	28	1.89
944492--944516	13	1.9	13	100	0	50	36	32	0	32	1.58
944626--944677	12	4.1	12	75	22	52	65	7	11	15	1.46
947810--947847	11	3.5	11	86	13	53	39	0	0	60	0.97
968233--968294	23	2.7	23	76	14	65	27	29	20	22	1.99
969862--969917	18	3.1	17	82	10	58	46	21	30	1	1.62
978856--979163	162	1.9	162	94	0	544	33	14	19	31	1.92
982197--982225	9	3.3	9	95	4	51	10	0	6	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983958--983995	20	2.0	20	94	5	69	21	7	5	65	1.38
983960--984010	20	2.5	20	84	6	59	17	5	3	72	1.20
983982--984014	16	2.0	17	88	5	50	18	3	0	78	0.87
984620--984735	18	6.5	18	70	15	71	25	9	0	64	1.23
989430--989454	11	2.3	11	100	0	50	40	0	8	52	1.31
997464--997546	18	4.5	18	71	11	60	24	8	1	66	1.27
997451--997535	38	2.2	39	91	4	136	28	7	0	64	1.19
997857--997967	57	1.9	57	92	0	186	51	18	12	18	1.76
999159--999211	21	2.5	21	72	6	54	32	16	13	37	1.88
1001538--1001625	21	4.2	21	73	5	70	38	13	12	35	1.83
1001568--1001636	21	3.3	21	81	0	84	36	13	17	33	1.88
1003099--1003562	2	233.0	2	62	24	85	46	3	4	45	1.41
1003133--1003536	20	20.0	20	68	22	111	46	3	4	44	1.42
1003104--1003236	31	4.3	31	80	11	101	45	3	5	45	1.44
1003130--1003354	53	4.5	51	75	21	219	45	4	4	44	1.45
1003106--1003413	147	2.1	149	87	3	455	45	3	4	46	1.42
1003186--1003367	94	1.9	94	84	8	246	46	4	4	44	1.45
1003316--1003383	33	2.1	33	88	0	100	48	4	2	44	1.38
1003395--1003454	21	2.9	22	80	14	65	48	6	1	43	1.39
1003489--1003575	42	2.1	42	80	8	97	51	1	6	40	1.36
1003469--1003578	13	8.1	13	67	19	55	50	0	8	40	1.38
1003775--1003825	17	3.1	16	80	5	59	52	1	11	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003775--1003817	8	5.0	9	77	11	54	53	2	11	32	1.50
1003820--1003914	2	47.0	2	70	17	63	46	4	2	47	1.33
1003887--1003925	20	2.0	20	89	0	60	46	7	5	41	1.55
1003952--1003993	22	1.9	22	95	0	75	42	0	7	50	1.30
1004034--1004087	17	3.0	17	83	8	54	44	1	3	50	1.30
1004116--1004173	27	2.1	27	90	6	91	37	3	3	55	1.34
1004208--1004690	8	62.2	8	68	22	129	36	9	2	51	1.49
1004208--1004765	22	23.6	24	68	24	193	36	8	3	51	1.48
1004264--1004507	106	2.3	108	85	7	336	34	7	3	54	1.45
1004463--1004573	30	3.4	32	73	19	104	38	7	2	51	1.44
1004519--1004593	28	2.6	28	83	12	91	38	9	1	50	1.43
1004546--1004616	21	3.3	22	86	5	92	36	11	1	50	1.47
1004778--1004825	2	24.5	2	85	12	64	54	0	2	43	1.12
1005091--1005119	2	14.5	2	100	0	58	51	0	0	48	1.00
1005516--1005561	24	1.9	24	82	8	58	34	13	2	50	1.53
1005661--1005734	2	37.0	2	97	0	139	51	0	0	48	1.00
1005802--1005845	4	11.0	4	95	0	79	52	25	0	22	1.48
1006328--1006466	22	6.5	22	70	19	98	52	2	10	35	1.47
1006338--1006473	28	4.5	28	74	21	132	52	2	9	35	1.46
1006413--1006499	28	3.0	28	83	6	95	51	2	6	39	1.41
1006822--1006861	15	2.7	15	80	0	53	32	30	7	30	1.85
1008547--1008573	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1011708--1011741	17	1.9	18	88	5	52	20	2	5	70	1.21
1011865--1012028	80	2.0	81	97	1	312	36	21	4	37	1.75
1013045--1013121	31	2.4	32	76	4	84	28	28	27	15	1.96
1015979--1016026	22	2.1	23	85	11	64	56	22	0	20	1.43
1018807--1018845	20	2.0	20	89	0	60	33	35	17	12	1.88
1022956--1023031	22	3.4	22	76	5	73	13	26	35	25	1.92
1035649--1035685	17	2.2	17	100	0	74	43	18	10	27	1.83
1037256--1037294	20	2.0	20	89	0	60	56	5	0	38	1.22
1037276--1037341	29	2.4	27	80	14	80	57	0	6	36	1.23
1040859--1040930	36	2.0	36	94	0	126	19	22	27	30	1.98
1042652--1042689	18	2.2	18	85	4	51	36	5	0	57	1.21
1044778--1044817	22	1.9	21	85	10	55	27	25	25	22	2.00
1045376--1045417	2	21.0	2	100	0	84	50	0	0	50	1.00
1046459--1046496	3	12.3	3	88	5	58	63	0	2	34	1.09
1046974--1047013	17	2.4	17	79	4	55	10	10	2	77	1.08
1047054--1047625	242	2.4	243	84	4	764	33	15	18	32	1.92
1047772--1047982	59	3.6	59	82	3	230	39	16	9	34	1.81
1056971--1057014	3	14.3	3	90	4	61	65	0	4	29	1.12
1059671--1059751	25	3.2	25	89	0	117	25	22	23	28	1.99
1061362--1061834	156	3.0	156	93	1	815	34	21	14	29	1.93
1069753--1069919	89	1.9	88	87	1	244	28	13	18	38	1.89
1070663--1070844	89	2.0	89	89	2	276	31	14	17	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1075814--1075877	8	8.4	8	93	6	107	78	0	21	0	0.76
1075804--1075877	23	3.2	23	88	9	107	77	0	21	1	0.85
1075804--1075887	24	3.6	23	84	10	84	77	0	21	1	0.84
1075804--1075887	16	5.6	14	83	9	62	77	0	21	1	0.84
1080736--1080772	6	6.5	6	81	12	51	83	0	13	2	0.74
1080736--1080772	17	2.2	17	95	0	65	83	0	13	2	0.74
1080822--1080859	15	2.4	16	86	4	51	81	0	13	5	0.85
1083763--1083797	2	17.5	2	100	0	70	48	0	0	51	1.00
1083849--1084018	5	34.0	5	70	13	82	16	4	5	73	1.18
1093851--1093884	18	1.9	18	88	5	52	41	5	2	50	1.42
1094378--1094439	22	2.8	22	87	0	79	33	24	20	20	1.97
1095651--1095684	18	1.9	18	94	5	61	38	5	5	50	1.51
1096025--1096121	44	2.2	44	81	3	115	32	19	15	31	1.93
1100848--1100968	3	39.7	3	86	3	170	61	0	0	38	1.02
1101095--1101282	76	2.5	76	95	1	333	35	19	20	23	1.96
1101526--1101729	90	2.3	90	96	1	374	25	17	20	37	1.94
1101752--1102020	113	2.4	114	93	2	454	30	20	11	37	1.88
1101808--1102204	186	2.1	184	93	2	679	31	18	11	38	1.87
1101922--1102093	73	2.4	73	96	2	310	34	16	11	37	1.84
1101995--1102317	111	2.9	113	95	2	598	30	18	11	39	1.86
1101752--1102614	297	2.9	297	97	0	1575	30	18	12	38	1.87
1102219--1102390	73	2.4	73	97	2	319	34	16	11	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1102292--1103000	113	6.2	114	91	4	1031	28	20	13	37	1.90
1102108--1102501	186	2.1	182	95	2	709	31	17	11	38	1.86
1102292--1102998	224	3.1	226	90	2	1082	28	19	13	37	1.90
1103379--1103433	22	2.5	22	93	0	92	34	14	16	34	1.89
1108115--1108151	14	2.5	16	83	16	53	0	13	0	86	0.57
1108114--1108151	10	3.9	10	82	6	51	0	13	0	86	0.56
1110589--1110628	14	2.9	14	88	0	62	55	5	12	27	1.58

Tables:   1   2   3   4   5

The End!