genome.fa.s8493.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008493.1 Hibiscus syriacus cultivar Beakdansim tig00111336_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  691020

Tables:   1   2   3   4   

This is table  2  of  4  ( 430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184368--184422	17	3.2	17	92	2	83	21	49	20	9	1.76
184414--184453	7	5.4	7	85	11	53	15	32	27	25	1.95
184414--184462	15	3.1	15	88	5	62	14	32	28	24	1.94
186922--187004	23	3.6	23	80	8	87	24	16	19	39	1.91
186937--187011	24	3.2	24	86	1	107	25	17	20	37	1.94
188856--188898	22	2.0	22	95	0	77	51	11	2	34	1.51
188858--188906	22	2.2	22	85	3	62	55	12	2	30	1.48
188914--188987	22	3.2	22	69	23	62	52	17	0	29	1.45
188958--189500	32	19.6	32	68	28	387	52	13	0	34	1.41
188846--189338	134	3.6	134	93	2	792	52	13	0	33	1.42
188992--189040	22	2.2	22	85	3	62	57	12	0	30	1.36
189046--189120	22	3.2	23	75	17	82	54	17	0	28	1.43
189124--189166	22	2.0	22	95	0	77	51	16	0	32	1.45
189126--189174	22	2.2	22	85	3	62	55	16	0	28	1.42
189177--189220	22	2.0	22	100	0	88	54	13	0	31	1.39
189143--189500	86	4.3	87	79	11	458	51	13	0	34	1.41
188846--189252	54	7.6	54	82	9	381	52	13	0	33	1.43
189264--189306	22	2.0	22	95	0	77	53	11	0	34	1.37
189232--189500	54	5.0	54	94	0	475	51	13	0	34	1.41
188856--189500	108	6.0	107	75	11	500	52	13	0	33	1.43
189326--189368	22	2.0	22	85	0	59	51	18	0	30	1.47
189374--189422	22	2.2	22	88	3	71	55	14	0	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189426--189468	22	2.0	22	100	0	86	51	13	0	34	1.42
189428--189476	22	2.2	22	88	3	71	55	14	0	30	1.40
192616--192643	13	2.2	13	100	0	56	71	7	7	14	1.29
193427--193470	21	2.0	24	82	13	58	38	6	9	45	1.63
195062--195235	45	3.9	45	92	0	287	39	6	22	31	1.79
195133--195206	22	3.2	24	63	18	66	45	4	17	32	1.67
207817--207856	18	2.3	18	95	4	73	50	10	10	30	1.69
216345--216573	62	3.7	61	80	5	201	27	22	17	31	1.97
216620--216857	83	2.9	82	82	2	289	38	19	18	23	1.93
216605--216877	82	3.3	83	79	6	313	37	19	19	23	1.94
217006--217031	3	8.7	3	100	0	52	34	0	0	65	0.93
221493--221538	23	2.0	23	91	0	74	43	34	13	8	1.74
221582--222577	509	2.0	496	92	3	1654	37	19	11	31	1.88
223216--223257	22	2.0	21	85	4	57	7	2	11	78	1.04
228290--228351	23	2.7	23	82	5	63	59	6	0	33	1.23
228313--228361	21	2.2	23	85	7	66	55	2	0	42	1.11
232090--232126	18	2.1	18	100	0	74	45	10	5	37	1.62
232466--232543	31	2.5	32	81	6	88	30	6	12	50	1.66
232956--233054	52	1.9	52	95	0	180	28	35	13	23	1.92
238569--239015	55	8.1	55	93	1	745	27	24	16	31	1.96
238569--239015	221	2.0	219	93	1	761	27	24	16	31	1.96
238569--239015	166	2.7	165	94	1	754	27	24	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239938--239989	8	6.5	8	91	6	70	11	7	0	80	0.89
249765--249832	17	4.2	17	81	14	81	19	44	23	13	1.85
249787--249822	13	2.8	13	95	4	65	16	47	25	11	1.79
249822--249854	7	4.7	7	100	0	66	15	30	30	24	1.95
249854--249935	29	2.8	29	94	0	146	23	9	23	43	1.83
249883--249958	29	2.6	29	83	6	82	28	9	23	38	1.86
256748--256792	17	2.6	17	92	0	72	20	44	24	11	1.83
256770--256812	13	3.4	13	96	3	79	16	46	23	13	1.83
256762--256841	15	5.5	15	81	14	55	15	43	23	17	1.86
256842--256922	29	2.8	29	92	1	137	23	9	22	44	1.82
259311--259344	15	2.2	16	89	5	52	26	26	5	41	1.78
265835--265867	16	2.0	17	88	5	50	24	3	9	63	1.38
266002--266052	20	2.6	20	87	3	68	35	3	9	50	1.54
266090--266115	7	3.7	7	100	0	52	23	0	0	76	0.78
271822--271888	22	3.2	20	79	14	64	76	4	2	16	1.08
272019--272055	18	2.1	18	100	0	74	27	27	21	24	1.99
272318--272363	12	3.8	12	88	0	65	67	0	13	19	1.23
280603--280643	14	2.9	14	88	3	55	80	2	17	0	0.82
282070--282094	9	2.8	9	100	0	50	16	0	24	60	1.36
291812--291873	23	2.9	21	80	7	72	20	32	25	20	1.98
291855--291899	21	2.2	21	84	7	58	24	31	31	13	1.93
294128--294169	15	2.9	15	89	6	61	28	0	21	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294276--294300	12	2.1	12	100	0	50	40	8	8	44	1.63
295814--295856	21	2.0	21	95	0	77	32	4	25	37	1.77
296453--296496	16	2.8	16	86	10	56	54	6	4	34	1.47
296745--296826	29	2.8	29	83	5	103	58	6	12	23	1.56
298120--298171	16	3.3	16	84	15	81	15	30	13	40	1.86
298114--298164	16	3.2	16	84	15	79	13	33	11	41	1.81
298111--298171	31	2.0	31	100	0	122	16	31	13	39	1.87
299109--299487	206	1.8	206	92	0	641	25	22	17	34	1.96
299833--299979	36	4.1	36	90	0	222	40	12	19	27	1.87
299813--299979	72	2.3	72	89	1	255	41	13	19	26	1.88
299867--299958	15	5.1	19	66	26	58	40	9	21	28	1.85
299970--300375	40	10.2	40	90	1	627	41	11	16	31	1.83
300057--300125	23	3.3	23	61	23	60	39	14	14	31	1.86
299945--300376	198	2.2	198	89	0	639	40	11	16	31	1.84
305283--305325	20	2.2	20	86	0	59	60	6	11	20	1.54
306342--306394	14	4.1	12	86	13	70	47	15	22	15	1.82
306342--306394	6	8.2	6	84	15	70	47	15	22	15	1.82
306342--306391	20	2.5	20	100	0	100	44	16	24	16	1.86
317934--317995	21	3.0	21	90	4	90	53	19	6	20	1.67
321191--321228	14	2.7	14	84	11	51	21	10	28	39	1.86
324822--324905	30	2.7	32	83	7	102	30	3	4	60	1.34
324963--325008	22	2.0	24	84	16	62	34	4	0	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325033--325067	17	2.1	17	88	0	52	17	5	0	77	0.96
325020--325084	22	2.8	22	81	6	58	15	9	1	73	1.15
335485--335518	15	2.3	15	94	0	59	88	0	2	8	0.62
335568--335604	13	2.7	14	91	4	58	81	2	16	0	0.81
338847--338940	24	3.7	24	72	22	66	29	2	0	68	1.02
338865--338937	31	2.4	32	82	13	91	32	1	0	65	1.01
338879--338934	22	2.4	23	88	5	78	35	0	0	64	0.94
338849--338938	22	4.2	22	68	23	66	30	2	0	67	1.02
338912--338991	32	2.5	33	81	8	92	16	3	1	78	0.95
338932--338994	25	2.6	24	76	14	74	11	6	1	80	0.95
338978--339032	20	2.8	20	75	16	60	12	14	1	70	1.24
339094--339141	9	5.3	9	87	5	62	18	8	2	70	1.22
339094--339151	18	3.2	18	81	11	66	18	8	1	70	1.21
340154--340195	20	2.1	20	95	0	75	26	0	14	59	1.35
342786--342911	44	2.9	44	86	0	171	38	23	14	23	1.91
345140--345181	22	1.9	22	95	0	75	26	26	11	35	1.91
353329--353443	55	2.0	59	93	6	202	28	12	26	33	1.92
376655--376691	15	2.5	15	90	0	65	43	5	2	48	1.40
385010--385038	12	2.4	12	100	0	58	0	41	31	27	1.56
386666--386716	23	2.3	23	83	6	70	21	21	39	17	1.93
399407--399519	55	2.0	56	94	3	201	30	23	15	30	1.95
409216--409255	19	2.1	19	85	0	53	55	7	2	35	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413737--413793	24	2.3	25	82	11	73	40	3	1	54	1.28
414086--414153	33	2.1	33	97	0	127	36	17	19	26	1.94
415977--416010	11	3.1	11	82	0	50	85	0	2	11	0.71
416149--416197	24	2.1	23	85	11	64	46	2	4	46	1.33
416176--416214	17	2.3	17	86	8	53	48	5	2	43	1.38
416123--416261	41	3.5	40	87	7	169	45	5	5	43	1.49
416123--416347	41	5.8	40	78	13	165	43	7	4	44	1.53
416194--416424	38	6.5	34	74	21	124	43	8	3	45	1.51
416305--416353	25	2.0	25	100	0	98	40	10	4	44	1.57
416308--416366	25	2.4	25	91	0	91	42	11	1	44	1.51

Tables:   1   2   3   4