genome.fa.s8493.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008493.1 Hibiscus syriacus cultivar Beakdansim tig00111336_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  691020

Tables:   1   2   3   4   

This is table  4  of  4  ( 430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624682--624725	23	2.0	22	86	4	61	38	4	15	40	1.68
625508--625685	44	4.2	44	80	8	172	50	5	16	26	1.67
625521--625684	86	1.9	86	82	5	206	51	4	16	27	1.65
628370--628777	210	1.9	210	82	3	500	29	20	16	33	1.94
631465--632225	209	3.7	210	83	5	888	29	17	17	35	1.93
632160--632289	64	2.0	64	83	2	163	35	7	21	35	1.82
632624--634201	407	3.8	414	79	8	1575	29	17	17	35	1.93
637173--638012	4	215.8	4	88	5	1224	25	1	25	47	1.62
641077--641558	56	8.7	56	90	1	745	33	19	10	36	1.87
641897--641968	22	3.5	20	81	9	83	29	29	16	25	1.97
641927--641970	19	2.3	19	84	0	61	29	29	13	27	1.94
641991--642040	20	2.5	20	87	6	66	18	30	18	34	1.94
646197--646249	20	2.6	21	85	5	65	15	28	15	41	1.87
647883--648194	162	1.9	162	86	2	448	34	19	18	27	1.95
647883--648194	54	5.8	54	85	2	385	34	19	18	27	1.95
649754--651074	211	6.3	211	78	4	1119	30	16	15	37	1.90
649754--651074	422	3.1	417	79	5	1293	30	16	15	37	1.90
649754--651074	633	2.1	633	80	4	1439	30	16	15	37	1.90
653283--653337	24	2.3	24	100	0	110	54	23	10	10	1.67
656279--656314	15	2.4	15	90	0	54	38	11	27	22	1.88
656696--656797	37	2.9	36	88	5	154	44	12	14	28	1.82
656696--656795	34	2.8	35	89	6	148	44	13	14	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656694--656831	37	3.8	37	83	4	147	42	11	13	31	1.80
657376--657410	16	2.1	18	89	10	56	25	8	0	65	1.21
657507--657547	18	2.4	16	88	8	55	26	2	0	70	0.99
660611--660714	8	12.9	8	71	11	61	75	7	14	1	1.10
660669--660713	23	2.0	23	86	8	65	73	8	13	4	1.23
661340--661388	22	2.2	22	92	0	80	32	24	14	28	1.94
661803--661838	18	2.0	18	88	0	54	19	8	30	41	1.81
662368--662490	36	3.4	36	82	7	142	25	21	13	39	1.90
663266--664202	105	9.0	105	92	1	1470	33	26	17	22	1.96
664748--664849	37	2.9	36	88	5	154	44	12	14	28	1.82
664748--664847	34	2.8	35	89	6	148	44	13	14	29	1.82
664746--664883	37	3.8	37	83	4	147	42	11	13	31	1.80
665297--665337	2	20.5	2	100	0	82	48	0	0	51	1.00
665446--665480	16	2.1	18	89	10	56	25	8	0	65	1.21
665577--665617	18	2.4	16	88	8	55	26	2	0	70	0.99
673170--673232	26	2.5	26	84	7	76	69	0	4	25	1.07
673309--673455	42	3.5	43	78	11	144	66	1	2	29	1.13
673309--673421	43	2.6	43	82	10	142	68	0	2	28	1.09
673289--673396	35	3.1	35	75	15	98	70	0	1	26	1.04
673309--673436	44	3.0	43	82	8	145	65	0	3	30	1.13
673292--673431	22	6.4	21	69	21	83	67	1	2	29	1.11
674419--674576	84	1.9	85	85	1	219	24	19	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674580--674674	39	2.6	36	83	9	120	26	7	24	42	1.80
674660--674893	36	6.6	36	76	13	200	39	14	20	26	1.90
674694--674880	102	1.8	102	82	6	245	39	12	20	27	1.89
674964--675046	38	2.2	38	80	6	98	48	13	18	20	1.81
674931--675171	101	2.3	103	86	2	333	38	12	18	30	1.88
675075--675258	87	2.1	87	93	0	314	36	13	17	32	1.89
674978--675363	189	2.0	189	83	3	472	38	12	18	30	1.87
675534--675730	106	1.9	106	85	0	277	24	19	22	32	1.97
676363--676451	32	2.8	32	86	3	126	32	25	14	26	1.95
677342--677479	69	2.0	69	94	0	240	25	13	22	38	1.91
677537--677601	27	2.4	26	77	7	67	4	16	1	76	1.02
677555--677607	11	4.6	11	81	9	70	1	16	1	79	0.92
677559--677605	24	1.9	25	91	4	78	2	17	2	78	0.94
677558--677612	26	2.2	25	86	3	74	1	14	3	80	0.94
680687--680744	26	2.3	25	82	8	64	68	1	8	20	1.25
680746--680873	11	10.9	12	68	19	67	71	0	4	22	1.09
680759--680878	46	2.6	47	78	12	122	72	0	3	23	1.05
680762--680873	48	2.3	50	79	11	128	73	0	3	22	1.04
680827--680896	36	2.0	35	88	8	106	67	0	1	31	1.00
681499--684043	211	12.3	209	76	6	2020	28	17	16	37	1.92
681578--684010	629	3.9	616	75	9	1701	28	17	16	37	1.92
683276--683629	194	1.8	194	83	6	466	28	17	15	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
683462--684043	212	2.8	210	80	3	587	27	15	18	38	1.91
683063--683843	406	1.9	405	81	6	945	27	17	16	38	1.91
684731--684773	18	2.4	17	81	11	50	23	6	2	67	1.27
687831--688611	206	3.8	203	76	8	693	28	17	17	36	1.93

Tables:   1   2   3   4

The End!