genome.fa.s8493.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008493.1 Hibiscus syriacus cultivar Beakdansim tig00111336_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  691020

Tables:   1   2   3   4   

This is table  3  of  4  ( 430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416330--416424	39	2.5	38	94	1	163	45	9	2	43	1.48
416394--416418	13	1.9	13	100	0	50	52	8	0	40	1.31
417079--417278	72	2.8	72	84	0	267	21	18	26	34	1.96
424626--424659	12	2.8	12	90	0	59	73	2	0	23	0.97
425691--425738	22	2.2	21	77	3	51	66	4	2	27	1.21
427056--427090	15	2.2	16	90	10	54	40	8	5	45	1.58
427070--427121	21	2.5	20	96	3	95	36	11	3	48	1.58
427133--427201	36	1.9	35	85	2	93	43	8	1	46	1.43
428000--428070	13	5.5	13	91	0	115	15	43	22	18	1.87
427979--428023	18	2.6	18	92	3	74	17	48	17	15	1.81
428018--428096	8	10.5	8	69	27	50	15	39	24	21	1.91
429363--429397	18	1.9	18	88	0	52	54	0	17	28	1.43
431811--432021	37	5.8	37	81	8	220	42	9	2	45	1.50
432693--432748	2	28.0	2	100	0	112	50	0	0	50	1.00
433943--434002	21	2.8	21	92	2	102	25	25	16	33	1.96
434141--434215	20	3.8	20	74	11	75	37	16	6	40	1.74
436836--436905	20	3.5	20	82	1	70	35	18	10	35	1.84
438792--438867	15	5.6	13	70	22	50	61	5	0	32	1.18
438821--438871	15	3.5	15	82	17	63	62	1	0	35	1.06
438928--438961	16	2.1	17	88	5	52	44	5	2	47	1.42
438993--439131	22	6.5	22	73	20	132	44	8	4	42	1.55
439069--439140	22	3.0	24	84	10	94	45	6	2	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439877--439972	50	1.9	51	82	2	122	28	13	17	40	1.88
444099--444130	2	16.0	2	100	0	64	50	0	0	50	1.00
448988--449042	21	2.7	20	77	8	56	60	1	12	25	1.43
452445--452502	21	2.8	20	76	7	62	25	27	15	31	1.96
455605--456097	246	2.0	247	99	0	970	27	13	18	40	1.88
460726--460791	31	2.1	32	83	13	84	60	0	9	30	1.27
461790--461843	15	3.5	14	83	16	63	62	1	0	35	1.06
461851--461904	29	1.9	29	85	7	76	44	7	0	48	1.31
461901--461933	16	2.1	16	94	0	57	45	9	6	39	1.61
461978--462006	14	2.1	14	100	0	58	44	6	6	41	1.58
461893--462022	36	3.6	36	80	14	149	43	9	6	40	1.61
469779--469808	15	1.9	16	93	6	53	46	3	3	46	1.35
469840--469885	21	2.2	21	88	3	67	52	4	0	43	1.21
469838--469890	21	2.7	18	73	18	52	47	3	0	49	1.19
474225--474290	33	2.0	33	96	0	123	45	6	13	34	1.68
474258--474526	81	3.3	81	86	0	351	33	13	23	30	1.92
474164--474372	114	1.8	114	94	0	373	37	10	19	32	1.86
474258--474561	81	3.7	81	84	2	349	33	13	23	29	1.93
475970--476041	36	2.0	36	94	0	126	30	9	12	47	1.74
479842--480171	81	4.1	81	85	0	392	33	12	22	31	1.91
480174--480266	45	2.1	45	83	4	116	40	16	19	23	1.90
484973--485050	40	2.0	40	89	0	120	29	20	12	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486360--486411	13	3.8	13	73	14	50	0	17	5	76	0.97
493538--493579	19	2.2	19	86	0	57	57	4	14	23	1.56
509928--510029	40	2.5	40	72	1	96	31	19	12	36	1.90
518915--518967	19	2.8	18	72	11	52	54	5	18	20	1.64
521827--521856	13	2.2	14	94	5	53	53	40	0	6	1.27
528322--528364	17	2.6	16	78	10	50	62	4	9	23	1.44
534107--534142	18	2.0	18	100	0	72	44	22	11	22	1.84
540858--541403	54	10.1	54	80	8	415	31	17	15	35	1.91
540858--541403	108	5.1	107	81	5	564	31	17	15	35	1.91
540979--541372	161	2.4	162	84	2	526	32	16	14	35	1.90
540862--541395	269	2.0	270	83	4	677	32	17	15	35	1.91
541458--541486	15	1.9	15	100	0	58	41	20	6	31	1.79
547869--548413	54	10.1	54	82	3	559	31	18	14	35	1.91
547885--548410	215	2.4	216	81	6	588	32	17	14	35	1.90
548467--548495	15	1.9	15	100	0	58	48	17	6	27	1.72
553752--553786	16	2.1	17	89	5	54	11	20	0	68	1.20
554089--554166	2	38.5	2	97	2	147	50	0	1	48	1.09
557530--557624	47	2.0	47	97	0	181	44	0	29	26	1.55
557542--557624	26	3.4	26	70	16	86	43	0	28	27	1.55
558754--558787	13	2.5	13	95	4	59	50	11	11	26	1.73
563694--563735	21	2.0	20	86	4	57	64	2	0	33	1.07
563694--563742	25	1.9	26	83	4	64	67	4	0	28	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563704--563743	21	1.9	21	85	10	55	70	5	0	25	1.08
564353--564412	27	2.3	26	82	5	75	8	20	1	70	1.22
570917--571108	97	2.0	97	100	0	384	30	17	19	33	1.94
571483--571529	20	2.2	22	77	14	62	29	8	14	46	1.74
571488--571535	20	2.4	20	89	0	78	25	8	16	50	1.73
576206--576602	2	205.0	2	69	19	220	41	4	2	51	1.33
576725--576845	23	5.2	24	74	18	69	37	8	1	52	1.41
576316--576844	14	37.9	14	69	20	97	37	6	2	53	1.40
579867--579908	22	1.9	22	90	0	66	45	4	2	47	1.36
579963--580041	2	39.0	2	70	12	54	49	2	2	45	1.29
580062--580191	19	6.7	20	67	23	82	37	6	3	52	1.44
580094--580206	38	2.8	39	77	20	119	38	5	2	53	1.38
580273--580460	25	7.4	26	70	24	88	37	6	2	53	1.40
580268--580444	17	11.0	16	70	22	90	37	6	2	53	1.40
580330--580499	19	8.6	20	74	19	94	39	5	1	52	1.36
580268--580460	60	3.3	60	77	13	163	37	7	2	53	1.40
580282--580452	13	12.4	14	70	23	91	38	7	1	52	1.39
580280--580444	2	80.0	2	66	18	63	38	6	1	52	1.38
580552--580825	2	138.5	2	64	20	69	44	5	4	46	1.44
580559--580818	11	23.6	11	66	18	62	44	4	4	46	1.43
580642--580706	33	2.0	33	84	6	87	41	4	6	47	1.49
580760--580825	15	4.5	15	81	11	82	48	4	1	45	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580759--580817	29	2.0	29	87	6	84	47	3	1	47	1.29
583677--584247	153	3.7	153	90	3	900	30	19	22	27	1.98
583688--584247	305	1.8	306	91	1	937	31	19	22	27	1.97
585881--585939	20	2.9	19	70	9	55	44	18	0	37	1.50
585910--585960	26	2.0	26	84	7	68	45	29	0	25	1.54
586143--586193	3	17.0	3	100	0	102	66	0	33	0	0.92
587754--587783	7	4.1	7	95	4	51	30	0	0	70	0.88
587755--587801	4	11.8	4	78	17	53	31	0	0	68	0.90
587734--587802	18	4.1	18	77	19	67	36	1	0	62	1.04
588016--588189	73	2.4	72	81	3	208	37	5	4	51	1.46
590012--590083	35	2.1	35	82	12	87	40	8	12	38	1.73
590904--590967	17	3.8	17	75	8	51	48	3	1	46	1.27
592699--592729	11	2.8	11	95	0	53	41	0	0	58	0.98
599941--600269	153	2.2	153	92	0	532	30	21	23	24	1.99
603251--603283	16	2.2	15	89	10	50	69	0	18	12	1.18
604230--604265	17	2.1	17	100	0	72	22	22	5	50	1.70
604247--604463	98	2.2	99	89	2	337	27	19	17	35	1.95
604345--605056	138	5.2	138	89	0	1059	25	19	17	37	1.93
604345--605056	277	2.6	275	89	0	1073	25	19	17	37	1.93
605969--606009	15	2.7	15	88	0	64	31	19	29	19	1.96
605984--606056	36	2.0	36	83	0	92	32	15	27	24	1.95
606058--606232	75	2.3	75	76	9	176	44	9	17	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606305--606430	65	1.9	65	90	3	200	41	12	16	29	1.85
608005--608114	7	15.7	7	100	0	220	13	13	0	72	1.12
608103--608182	24	3.2	24	76	13	74	8	13	5	72	1.25
608103--608165	28	2.3	26	79	17	65	6	14	4	74	1.18
612179--612529	177	2.0	177	99	0	693	37	23	17	21	1.94
615024--615123	26	3.7	27	75	11	89	40	3	7	50	1.45
615126--615227	29	3.6	29	81	1	107	31	16	7	44	1.76
615562--615857	153	1.9	153	94	0	520	29	19	24	25	1.99
621850--621944	49	1.9	50	91	6	158	31	6	22	40	1.79
621860--622341	241	2.0	239	95	4	866	29	11	21	37	1.88

Tables:   1   2   3   4