genome.fa.s8528.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008528.1 Hibiscus syriacus cultivar Beakdansim tig00111403_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1199389

Tables:   1   2   3   4   

This is table  2  of  4  ( 468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310322--310353	14	2.3	14	100	0	64	50	28	6	15	1.68
310322--310361	14	2.9	14	92	0	53	50	25	7	17	1.72
310983--311042	29	2.2	27	82	11	77	43	11	3	41	1.57
318859--318905	19	2.5	20	74	19	55	59	6	12	21	1.55
319763--319809	24	2.0	24	100	0	94	34	14	21	29	1.93
319822--319865	22	2.0	21	83	16	54	22	13	4	59	1.53
330381--330449	22	3.4	22	69	22	78	34	4	17	43	1.69
330380--330455	38	2.0	38	100	0	152	34	5	18	42	1.73
344750--344785	18	2.0	18	88	0	54	30	5	61	2	1.33
347966--348204	29	8.3	29	81	6	218	43	17	3	35	1.66
347966--348204	57	4.2	57	81	3	205	43	17	3	35	1.66
348230--348273	19	2.3	19	80	0	61	18	29	34	18	1.94
353105--353135	12	2.6	12	89	0	53	51	0	0	48	1.00
353116--353458	44	7.9	42	85	6	400	43	0	9	47	1.35
353119--353458	66	5.2	65	86	2	441	42	0	9	47	1.35
353118--353458	22	15.6	22	81	5	352	42	0	9	47	1.35
353604--353680	21	3.7	21	75	3	84	22	18	24	35	1.96
353600--353677	41	1.9	41	94	0	138	21	19	23	35	1.96
353708--353760	22	2.4	22	83	0	70	16	15	30	37	1.90
353861--353893	6	5.5	6	100	0	66	33	51	15	0	1.43
354497--354592	41	2.3	41	85	5	131	40	22	19	16	1.91
354525--354597	20	3.6	20	74	3	74	39	23	20	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354522--354601	41	2.0	41	94	0	142	37	22	18	21	1.94
354727--354803	22	3.5	22	96	0	136	38	0	9	51	1.34
354829--354887	31	1.9	31	92	0	100	44	8	5	42	1.57
366025--366073	20	2.5	20	93	0	80	20	10	24	44	1.82
366210--366234	12	2.1	12	100	0	50	40	24	16	20	1.91
370816--371212	198	2.0	199	98	1	771	33	14	15	37	1.87
372138--372201	33	2.0	33	91	8	107	29	4	15	50	1.65
376307--376426	42	2.9	42	100	0	240	15	20	19	45	1.86
376619--376694	28	2.7	29	84	9	97	50	1	0	48	1.09
376619--376720	27	3.9	25	77	13	80	47	0	0	51	1.07
376619--376699	15	5.7	15	72	16	66	49	1	0	49	1.08
376686--376742	20	2.7	22	79	17	68	38	0	0	61	0.96
376678--376773	28	3.5	28	79	16	94	41	1	1	56	1.13
376983--377051	14	4.9	15	74	12	74	30	18	7	43	1.77
376932--377000	20	3.5	20	95	0	129	36	14	10	39	1.80
376983--377051	29	2.4	29	90	4	106	30	18	7	43	1.77
385993--386031	20	2.0	20	100	0	78	33	10	15	41	1.81
386033--386074	21	2.0	20	86	4	57	40	7	14	38	1.73
390094--390135	18	2.3	18	95	0	75	54	14	4	26	1.59
392384--392422	2	19.5	2	83	0	51	41	2	5	51	1.38
395505--395576	30	2.4	31	81	6	85	38	8	15	37	1.77
401353--401416	21	3.1	20	79	18	69	46	0	4	48	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403770--403818	26	1.9	26	84	12	66	38	0	4	57	1.18
406025--406159	67	2.0	67	97	0	252	20	18	26	34	1.95
412146--412171	13	2.0	13	100	0	52	15	7	0	76	0.99
413623--413681	18	3.2	20	76	16	72	69	0	6	23	1.12
413627--413699	37	2.0	37	83	5	94	65	0	10	23	1.24
413715--413764	2	25.5	2	95	4	93	52	0	0	48	1.00
413715--413800	12	6.7	13	81	15	83	52	4	1	41	1.30
415429--416344	211	4.3	211	94	0	1451	22	19	24	33	1.97
415429--416344	105	8.7	105	92	1	1424	22	19	24	33	1.97
415429--416344	316	2.9	317	92	1	1498	22	19	24	33	1.97
417174--417210	5	7.8	5	82	11	51	0	0	13	86	0.57
417173--417203	13	2.4	13	100	0	62	0	0	12	87	0.55
417179--417213	8	4.5	8	85	7	54	0	0	11	88	0.51
417173--417213	13	3.0	13	83	13	55	0	0	12	87	0.53
427768--427821	21	2.5	20	80	14	56	70	1	3	24	1.13
427942--428000	18	3.2	20	76	16	72	69	0	6	23	1.12
427946--428018	37	2.0	37	83	5	94	65	0	10	23	1.24
428031--428068	8	5.0	8	87	9	53	52	7	0	39	1.31
433429--433462	16	2.1	16	89	10	52	73	20	5	0	1.04
435320--435347	2	14.0	2	100	0	56	50	0	0	50	1.00
440798--440881	43	2.0	43	92	0	141	34	26	13	26	1.93
442050--442142	46	2.0	46	87	4	134	31	13	30	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444509--444573	30	2.2	30	85	0	85	30	6	10	52	1.61
444732--444756	11	2.3	11	100	0	50	0	0	8	92	0.40
455136--455890	128	5.9	128	95	0	1336	22	25	19	32	1.98
455136--455890	254	3.0	255	95	1	1325	22	25	19	32	1.98
455136--455883	382	2.0	382	95	0	1336	22	25	19	32	1.98
456289--456388	34	3.0	34	85	2	148	39	3	3	55	1.31
456907--457000	21	4.5	21	92	5	145	20	27	34	18	1.95
458777--458856	34	2.5	31	82	12	90	60	2	0	37	1.11
469531--469590	17	3.2	17	79	20	75	20	46	21	11	1.82
469533--469584	22	2.4	22	96	0	95	21	51	19	7	1.71
476759--476838	10	8.3	9	78	13	70	16	28	26	28	1.97
476758--476832	29	2.5	30	89	8	118	17	26	26	29	1.97
476834--476893	17	3.3	17	76	17	66	20	46	21	11	1.82
476843--476887	21	2.1	21	100	0	90	17	48	24	8	1.75
476841--476881	12	3.7	12	75	18	52	19	48	21	9	1.77
481182--481225	15	3.0	15	83	12	56	77	6	0	15	0.97
484440--484487	23	2.1	22	84	7	60	56	14	2	27	1.50
488212--488287	31	2.5	31	84	0	98	42	7	10	39	1.69
489634--489668	2	17.5	2	100	0	70	51	0	0	48	1.00
499364--499398	18	1.9	18	88	0	52	54	0	17	28	1.43
504843--504881	2	20.0	2	94	5	71	51	0	0	48	1.00
513896--513936	22	1.9	21	85	5	55	29	2	14	53	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514562--514602	20	2.0	22	85	9	59	24	12	9	53	1.68
525744--525855	57	2.0	57	89	3	172	25	25	22	27	2.00
527860--528012	31	4.7	32	84	6	184	22	12	24	40	1.88
527862--528012	64	2.3	65	90	2	232	23	11	24	40	1.88
528157--528181	3	8.3	3	100	0	50	68	32	0	0	0.90
534312--534370	21	2.9	19	80	14	64	20	38	25	15	1.91
550752--550841	44	2.0	44	100	0	180	35	11	24	28	1.90
551393--551837	82	5.4	81	79	8	411	32	16	18	33	1.93
551490--551789	162	1.9	161	83	3	397	33	14	18	34	1.90
560309--560382	31	2.4	31	81	2	78	35	22	17	24	1.95
560668--560700	2	16.5	2	100	0	66	48	0	0	51	1.00
581662--582363	350	2.0	349	93	4	1200	35	14	20	30	1.92
584243--584281	20	1.9	20	84	5	51	41	0	5	53	1.23
585280--585330	26	1.9	27	84	4	68	47	1	1	49	1.24
585280--585330	27	1.9	26	84	4	66	47	1	1	49	1.24
587032--587448	166	2.5	163	79	14	449	27	16	12	44	1.83
587332--587926	109	5.5	111	85	8	743	26	14	13	45	1.81
587365--587926	220	2.6	216	85	9	738	25	14	13	46	1.81
590884--590941	27	2.1	27	100	0	116	27	32	8	31	1.87
605400--605494	35	2.8	34	73	21	92	41	0	0	58	0.98
605401--605475	32	2.2	32	83	6	87	41	0	0	58	0.98
605462--605496	17	2.1	17	94	0	61	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605626--605679	17	3.2	16	78	2	54	37	0	3	59	1.15
607204--607251	21	2.3	21	88	0	69	25	41	12	20	1.87
607255--607369	21	5.5	21	81	8	135	19	33	22	25	1.97
607886--607984	35	2.9	35	87	1	137	53	5	3	38	1.38
607913--607971	28	2.1	29	87	9	86	57	3	1	37	1.25
607887--607994	34	3.1	34	87	1	144	54	5	2	37	1.38
608227--608279	23	2.3	23	93	0	88	33	15	0	50	1.44
611492--611532	6	6.8	6	79	20	50	48	36	0	14	1.44
613375--613631	127	2.0	126	90	2	408	35	14	12	37	1.84
613957--614019	28	2.3	27	78	8	63	46	1	3	49	1.27

Tables:   1   2   3   4