genome.fa.s8528.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008528.1 Hibiscus syriacus cultivar Beakdansim tig00111403_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1199389

Tables:   1   2   3   4   

This is table  4  of  4  ( 468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
943214--943341	61	2.1	62	89	4	206	24	20	20	35	1.96
943161--943341	19	8.9	20	68	16	97	23	19	19	36	1.95
943638--943673	15	2.4	15	90	0	54	25	11	22	41	1.86
945473--945542	34	2.1	34	94	0	122	37	14	8	40	1.76
961499--961562	31	2.1	31	96	0	119	37	15	18	28	1.92
961506--961572	31	2.4	28	87	12	93	34	14	19	31	1.92
962629--962690	26	2.3	27	83	8	74	54	1	4	38	1.31
971802--971843	22	1.9	22	85	0	57	30	19	9	40	1.83
974155--974200	23	2.2	20	76	23	51	54	4	2	39	1.32
977433--977471	20	2.0	20	84	0	51	56	0	5	38	1.22
978824--978998	29	5.9	30	77	17	120	37	5	0	57	1.23
978845--978993	29	5.1	29	83	10	178	36	5	0	57	1.21
979152--979178	2	13.5	2	100	0	54	51	0	0	48	1.00
985629--985781	68	2.2	69	85	6	197	27	26	26	19	1.99
986087--986156	29	2.4	29	90	0	104	37	10	14	38	1.79
986172--986231	30	2.0	31	90	3	95	36	6	23	33	1.81
986451--986517	22	3.0	22	97	0	125	19	25	26	28	1.99
992575--992728	69	2.2	69	85	5	197	27	25	27	19	1.99
993035--993104	29	2.4	29	90	0	104	37	10	14	38	1.79
993120--993179	30	2.0	31	90	3	95	36	6	23	33	1.81
993399--993465	22	3.0	22	100	0	134	19	26	26	26	1.99
998072--998123	25	2.0	26	85	3	70	61	13	0	25	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998267--998291	12	2.1	12	100	0	50	36	24	0	40	1.55
999248--999347	51	1.9	52	82	6	123	31	3	14	52	1.56
1004178--1004332	41	3.8	41	81	5	179	28	16	16	39	1.89
1004178--1004332	81	1.9	82	85	4	215	28	16	16	39	1.89
1005228--1005254	4	6.8	4	100	0	54	25	0	25	48	1.52
1008948--1008993	24	1.9	24	100	0	92	26	6	34	32	1.82
1014477--1014567	43	2.1	44	89	2	139	35	20	16	27	1.94
1026077--1026145	30	2.2	30	85	15	95	34	5	17	42	1.73
1026086--1026145	30	2.0	30	93	6	104	33	6	16	43	1.74
1026324--1026397	20	3.7	20	80	7	87	18	27	24	29	1.98
1026324--1026379	21	2.8	20	88	2	76	19	26	25	28	1.99
1026324--1026404	41	2.0	41	87	4	119	20	25	25	27	1.99
1029628--1029696	30	2.2	30	85	15	95	34	5	17	42	1.73
1029637--1029696	30	2.0	30	93	6	104	33	6	16	43	1.74
1029878--1029957	41	2.0	41	85	9	110	21	26	23	28	1.99
1032375--1032481	56	1.9	57	84	5	146	34	12	20	32	1.90
1040405--1040491	45	1.9	45	93	4	149	37	3	3	55	1.34
1043988--1044051	30	2.1	31	83	13	80	56	1	0	42	1.09
1044093--1044155	32	2.0	31	85	11	85	52	1	1	44	1.20
1044148--1044208	30	2.0	30	87	0	86	50	1	3	44	1.28
1044206--1044252	22	2.1	22	84	0	58	57	0	4	38	1.18
1044200--1044240	14	2.9	14	88	0	55	56	0	2	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044265--1044309	22	2.1	22	88	12	67	46	2	0	51	1.13
1045648--1045735	43	2.0	43	95	0	158	53	10	13	22	1.70
1055202--1055235	14	2.4	14	95	0	59	2	20	0	76	0.92
1063646--1063720	36	2.1	36	97	0	141	32	12	13	42	1.80
1064576--1064677	35	2.8	36	79	11	127	34	6	16	42	1.75
1064576--1064694	37	3.3	36	80	10	129	34	5	18	41	1.75
1065498--1065542	21	2.1	21	83	0	54	31	31	24	13	1.93
1066273--1066338	31	2.2	30	81	10	80	30	19	18	31	1.96
1066327--1066392	29	2.2	30	89	2	98	19	19	28	31	1.97
1070459--1070503	21	2.1	21	83	0	54	31	31	24	13	1.93
1071231--1071296	31	2.2	30	81	10	80	30	19	18	31	1.96
1071285--1071377	30	3.1	30	90	1	143	20	21	25	32	1.98
1072410--1072443	16	2.1	16	88	5	50	41	2	17	38	1.65
1076604--1077034	103	4.2	103	97	0	799	25	12	24	37	1.91
1077044--1077111	23	3.0	23	84	0	91	17	25	26	30	1.97
1083789--1084320	103	5.2	103	96	0	992	25	12	25	37	1.90
1084331--1084393	23	2.7	23	87	0	99	15	23	26	33	1.95
1086250--1086343	35	2.7	35	94	1	161	31	5	17	45	1.70
1086250--1086358	35	3.1	35	89	2	121	33	4	19	43	1.71
1089837--1089881	18	2.5	18	88	0	72	28	31	20	20	1.97
1090910--1090969	29	2.1	29	100	0	120	35	16	13	35	1.88
1094985--1095037	27	1.9	28	84	3	72	33	9	7	49	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1095832--1095942	39	2.8	40	78	6	109	28	40	7	23	1.81
1102834--1102898	23	2.7	25	77	11	66	35	20	20	24	1.96
1102989--1103057	30	2.2	30	85	15	95	36	5	15	42	1.72
1102998--1103057	30	2.0	30	93	6	104	35	6	15	43	1.72
1103193--1103245	20	2.7	20	93	0	88	16	30	22	30	1.96
1105742--1105853	7	16.0	7	73	10	79	50	26	0	22	1.49
1105750--1105823	28	2.6	28	85	8	89	50	27	0	22	1.50
1105934--1105963	14	2.1	14	93	0	51	43	0	6	50	1.28
1106342--1106419	38	2.1	38	90	0	120	44	19	21	14	1.85
1107290--1107315	6	4.3	6	100	0	52	46	0	0	53	1.00
1108647--1108677	13	2.4	13	94	0	53	19	6	0	74	1.03
1112930--1113010	24	3.2	25	79	12	76	60	0	1	38	1.05
1117124--1117165	7	6.0	7	88	0	57	30	23	26	19	1.98
1117124--1117156	14	2.4	14	100	0	66	30	21	27	21	1.98
1118835--1118906	22	3.2	22	96	2	126	47	4	12	36	1.61
1126508--1126549	19	2.3	19	80	8	52	57	4	0	38	1.20
1128102--1128132	2	15.5	2	100	0	62	48	0	0	51	1.00
1128506--1128607	44	2.3	44	79	15	113	24	14	8	51	1.70
1128578--1128687	41	2.6	41	82	2	130	28	16	8	47	1.75
1128531--1128673	41	3.4	41	78	6	144	25	15	7	51	1.70
1128531--1128687	83	1.9	85	80	9	187	26	15	8	49	1.72
1130892--1131327	171	2.5	171	91	2	698	35	16	22	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1134479--1134590	60	1.9	57	83	7	145	33	18	4	43	1.70
1134508--1134598	30	3.1	29	70	10	67	31	18	5	43	1.73
1134819--1134879	24	2.4	25	76	15	72	49	0	6	44	1.28
1134826--1134866	19	2.2	19	95	0	73	48	0	7	43	1.30
1134907--1134941	2	17.5	2	100	0	70	51	0	0	48	1.00
1142157--1142213	28	2.0	28	89	0	87	28	22	19	29	1.98
1143416--1144676	631	2.0	630	99	0	2513	29	16	20	33	1.94
1148437--1148555	59	2.0	59	80	8	134	41	5	21	31	1.75
1164516--1164545	16	1.9	16	93	6	53	50	6	3	40	1.45
1164673--1164745	31	2.3	32	88	2	103	27	34	24	13	1.93
1167199--1167243	23	1.9	24	86	4	65	33	20	24	22	1.97
1169015--1169087	23	3.2	23	78	0	74	41	16	17	24	1.90
1169082--1169139	30	2.0	30	81	15	70	63	13	6	15	1.49
1173614--1173656	16	2.6	18	79	20	58	2	30	0	67	1.03
1175384--1175410	2	13.5	2	100	0	54	51	0	0	48	1.00
1175767--1175816	2	25.0	2	100	0	100	0	50	0	50	1.00
1180146--1180202	21	2.7	21	97	0	105	31	0	8	59	1.28
1180311--1180341	2	15.5	2	100	0	62	48	0	0	51	1.00
1183761--1183865	2	53.5	2	94	3	187	52	0	0	47	1.00
1194799--1194859	23	2.9	19	81	11	59	21	36	26	16	1.94

Tables:   1   2   3   4

The End!