genome.fa.s8530.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008530.1 Hibiscus syriacus cultivar Beakdansim tig00111408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  724678

Tables:   1   2   3   4   

This is table  2  of  4  ( 397 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272397--272427	16	1.9	16	100	0	62	58	22	12	6	1.58
272483--272540	20	2.9	20	94	0	107	56	22	13	6	1.61
272482--272569	10	8.4	10	74	9	77	57	19	12	10	1.63
272482--272569	20	4.2	20	80	11	95	57	19	12	10	1.63
272546--272592	23	2.0	23	83	0	58	63	10	6	19	1.47
272514--272622	33	3.3	33	84	3	130	62	16	8	12	1.53
272579--272622	23	1.9	23	90	0	70	68	18	2	11	1.30
274704--274744	20	2.0	21	86	9	59	39	12	4	43	1.63
278436--278473	6	6.3	6	100	0	76	36	0	0	63	0.95
280399--280668	93	2.9	92	91	3	416	39	15	8	36	1.78
281845--281869	2	12.5	2	100	0	50	52	0	0	48	1.00
284288--284467	60	3.0	60	77	9	172	42	5	21	31	1.75
284722--284912	20	9.4	20	75	7	125	26	23	20	29	1.99
284773--284912	60	2.3	60	79	2	156	29	23	20	26	1.99
285484--285567	20	4.3	19	85	7	80	15	17	25	41	1.89
285497--285685	20	9.6	19	77	6	139	21	20	26	31	1.98
285497--285709	60	3.6	60	73	9	186	21	20	25	32	1.98
286156--286202	24	2.0	24	91	0	76	63	2	2	31	1.18
286191--286492	151	2.0	153	93	1	518	35	13	16	35	1.88
287554--287677	59	2.1	59	80	7	135	34	14	16	34	1.89
292405--292452	24	2.0	24	83	0	60	41	22	18	16	1.90
295031--295231	83	2.4	83	81	5	219	30	20	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295232--295360	42	3.1	41	72	13	120	30	24	13	31	1.94
298012--298036	6	4.2	6	100	0	50	52	0	48	0	1.00
298685--298729	20	2.2	20	84	7	56	44	11	13	31	1.78
306407--306447	22	2.0	22	85	9	59	43	2	2	51	1.28
309677--309761	41	2.1	41	89	8	131	41	3	4	50	1.40
310212--310361	60	2.5	59	82	6	160	34	16	2	48	1.57
310499--310636	60	2.3	62	85	7	176	41	5	20	32	1.76
316768--316810	21	2.0	21	100	0	86	23	18	25	32	1.97
317649--317699	17	3.1	17	82	5	68	66	0	0	33	0.92
323565--323610	22	2.0	23	87	4	67	43	10	6	39	1.66
323960--324032	23	3.2	23	94	0	119	34	20	8	36	1.83
324440--324507	23	3.0	23	84	0	91	36	20	5	36	1.77
324907--324979	23	3.2	23	84	0	92	36	20	5	36	1.76
325385--325457	23	3.2	23	92	0	119	38	21	5	34	1.77
323566--327240	477	7.7	477	91	4	5869	40	10	7	41	1.67
325862--325934	23	3.2	23	92	0	119	38	21	5	34	1.77
326350--326399	23	2.2	23	96	0	91	36	22	8	34	1.83
323566--327240	942	3.9	936	90	5	5647	40	10	7	41	1.67
326804--326876	23	3.2	23	92	0	119	38	21	5	34	1.77
328682--328928	120	2.1	120	93	0	422	38	15	13	32	1.87
328517--329111	303	2.0	303	95	0	1073	34	15	14	34	1.89
328802--329389	183	3.2	183	94	1	1002	33	16	14	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330600--330645	12	3.8	12	88	0	65	19	32	6	41	1.77
330600--330645	6	7.7	6	82	0	56	19	32	6	41	1.77
333460--333489	15	1.9	16	93	6	53	43	6	10	40	1.64
333651--333714	30	2.1	30	85	0	83	20	17	26	35	1.94
334470--335209	200	3.7	200	95	0	1309	30	18	15	36	1.92
335431--335491	19	3.3	18	88	2	59	52	11	1	34	1.47
335443--335491	19	2.6	19	96	0	89	55	10	2	32	1.45
337283--337348	33	2.0	33	87	0	96	22	46	0	30	1.52
337382--337446	21	3.1	21	90	0	94	18	29	10	41	1.84
339875--339921	20	2.4	19	82	10	67	19	17	10	53	1.72
339662--340133	182	2.6	181	90	0	712	26	16	14	42	1.86
339662--340135	180	2.6	179	88	2	696	26	16	14	42	1.86
342414--342490	33	2.4	33	93	2	129	25	46	14	12	1.80
342473--342555	29	2.9	29	90	0	121	21	39	24	14	1.91
342564--342626	22	2.9	22	97	0	117	25	36	15	22	1.94
343086--343147	28	2.1	30	94	5	110	30	0	12	56	1.37
343441--343485	21	2.2	21	84	4	56	35	0	8	55	1.31
346640--346885	60	4.3	60	85	10	347	40	0	12	47	1.41
346744--346796	25	2.1	25	82	6	63	41	0	11	47	1.39
346758--346881	48	2.6	48	89	6	182	40	0	10	49	1.37
346853--346900	14	3.6	14	81	16	66	35	0	16	47	1.47
346805--346908	25	4.2	24	77	15	106	39	0	14	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348771--348801	15	2.1	14	94	5	53	54	6	0	38	1.26
348776--348822	16	3.0	16	84	9	53	59	10	0	29	1.31
349005--349112	40	2.6	40	78	12	103	49	11	0	38	1.45
349123--349163	22	1.9	21	85	5	55	53	19	0	26	1.45
349265--349328	28	2.2	28	84	13	78	3	37	0	59	1.13
349635--349711	33	2.4	33	95	2	138	10	12	49	27	1.74
356215--356260	17	2.6	19	76	13	53	39	8	10	41	1.71
359812--359859	19	2.5	19	82	0	60	58	8	14	18	1.61
365959--366030	38	1.9	37	83	5	92	50	4	1	44	1.30
384153--384201	22	2.2	22	92	0	80	48	8	24	18	1.75
384522--384549	2	14.0	2	100	0	56	50	0	0	50	1.00
400952--400995	19	2.4	19	88	11	65	65	0	9	25	1.21
418851--418921	24	3.0	24	85	2	99	19	25	25	29	1.99
419010--419042	2	17.0	2	93	6	59	51	0	0	48	1.00
419113--419150	20	1.9	20	84	10	51	50	5	15	28	1.66
420912--420962	20	2.4	22	87	12	88	35	31	3	29	1.76
426097--426131	18	2.0	18	88	5	54	60	5	0	34	1.21
427400--427443	10	4.4	10	79	0	52	18	9	13	59	1.60
434369--434435	20	3.2	20	68	15	55	44	1	8	44	1.44
434347--434435	42	2.1	42	95	0	160	42	2	7	47	1.45
434340--434415	22	3.5	22	74	13	86	40	2	5	51	1.38
435997--436076	40	2.0	40	97	2	153	25	15	18	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437985--438030	14	3.1	14	88	11	74	47	15	21	15	1.81
440251--440351	51	2.0	51	98	0	193	34	12	21	30	1.91
448211--448241	4	7.8	4	100	0	62	25	0	48	25	1.52
451571--451633	19	3.2	19	77	4	54	46	1	1	50	1.20
451595--451641	21	2.2	22	84	3	60	48	2	2	46	1.25
451821--451859	20	2.0	20	84	0	51	48	5	0	46	1.24
454651--454700	22	2.3	22	92	0	82	20	42	16	22	1.89
455060--455114	20	2.8	19	81	8	65	18	16	20	45	1.86
456604--456653	21	2.4	21	82	0	64	20	12	34	34	1.89
457064--457134	21	3.4	21	78	0	88	25	38	16	19	1.93
458864--458902	6	6.5	6	87	0	60	15	0	20	64	1.30
461177--461228	24	2.2	24	82	0	59	36	21	19	23	1.95
461954--461990	16	2.4	16	86	8	51	64	0	5	29	1.15
462168--462298	20	6.5	20	75	11	97	27	12	24	35	1.92
462190--462274	41	2.1	40	84	2	107	28	12	24	34	1.92
462198--462298	40	2.5	41	85	3	132	25	11	25	36	1.90
465076--465227	72	2.1	74	83	4	193	37	3	8	50	1.49
469706--469853	61	2.5	60	83	10	178	41	6	20	31	1.77
470760--470814	3	18.7	3	96	3	103	34	0	0	65	0.93
471768--471798	13	2.5	13	94	5	55	74	0	0	25	0.82
473546--473795	138	1.8	138	91	0	412	26	20	17	36	1.94
473546--473804	137	1.9	138	88	0	394	27	19	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474430--474475	20	2.3	20	96	0	83	19	19	19	41	1.91
481023--481155	59	2.2	59	84	9	164	41	9	11	38	1.73
482611--482754	76	1.9	76	86	0	207	43	10	12	34	1.77
482534--482854	176	1.8	176	82	2	421	45	10	10	33	1.72
482687--482965	99	2.8	99	84	2	364	44	11	12	32	1.77
490590--490651	21	3.0	21	73	17	65	29	3	3	64	1.25
490643--491252	43	14.1	43	74	11	439	26	17	5	49	1.69
490643--491210	87	6.6	84	78	9	472	26	17	5	49	1.69
492240--492280	18	2.3	18	91	4	66	29	4	2	63	1.28
498510--498562	27	2.0	27	82	14	65	43	16	11	28	1.83

Tables:   1   2   3   4