Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008530.1 Hibiscus syriacus cultivar Beakdansim tig00111408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  724678

Tables:   1   2   3   4   

This is table  4  of  4  ( 397 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
655600--655650
21
2.4
21
81
15
61
29
3
0
66
1.09
655888--655927
21
1.9
21
85
10
55
12
17
0
70
1.18
656022--656068
23
2.1
23
84
4
60
14
10
2
72
1.21
656590--656656
31
2.2
31
86
0
89
41
17
4
35
1.70
658684--658723
6
6.7
6
94
0
71
32
0
17
50
1.47
659955--659994
2
20.5
2
94
5
73
50
0
0
50
1.00
662712--662759
20
2.3
21
78
3
53
47
2
4
45
1.33
675811--676206
195
2.0
195
85
3
539
20
26
16
36
1.94
679113--679203
42
2.2
42
93
0
155
23
24
24
28
1.99
683386--683626
30
8.2
30
88
5
341
9
30
26
34
1.87
683400--683626
84
2.6
85
90
4
339
8
31
25
34
1.86
683386--683601
114
1.9
114
91
0
351
9
31
26
33
1.88
685605--685661
24
2.4
23
82
8
69
17
5
63
14
1.48
685838--685937
27
3.7
27
85
2
139
25
5
47
23
1.72
694311--694423
21
5.4
21
74
19
110
18
21
24
35
1.96
694317--694500
42
4.3
42
88
4
280
21
20
22
35
1.96
694288--694500
86
2.5
84
84
7
290
22
21
21
35
1.96
694336--694493
21
7.4
21
69
20
96
20
20
22
37
1.95
694291--694507
42
5.1
42
86
5
251
22
21
21
35
1.96
694767--694806
21
1.9
21
89
0
62
30
30
17
22
1.97
694832--694889
19
3.1
19
97
0
107
20
39
15
24
1.91
694767--694951
83
2.2
85
84
6
234
31
27
15
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
694843--694995
64
2.4
63
81
8
175
28
26
15
28
1.96
696318--696363
19
2.4
19
82
7
58
52
8
10
28
1.66
697056--697126
34
2.1
33
86
2
97
33
14
29
22
1.93
697365--697448
21
3.8
21
73
14
78
30
23
21
23
1.99
697457--697634
21
8.6
21
82
7
229
22
21
23
32
1.98
697438--697634
41
4.8
42
85
6
219
22
21
22
32
1.98
697457--697614
62
2.5
62
95
0
289
22
21
22
33
1.97
700041--700155
60
1.9
60
82
3
142
30
11
19
39
1.86
708225--708312
37
2.5
36
83
7
126
48
0
2
48
1.13
708227--708312
35
2.5
34
88
7
120
47
0
2
50
1.14
709094--709152
19
3.3
19
64
22
54
57
11
3
27
1.50
709086--709155
35
2.0
35
100
0
140
57
11
5
25
1.56
709210--709252
14
3.2
14
80
6
54
60
2
0
37
1.10
710060--710106
13
3.6
13
80
8
51
63
2
0
34
1.06
712470--712558
44
2.0
44
100
0
178
40
13
2
43
1.56

Tables:   1   2   3   4

The End!