genome.fa.s8530.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008530.1 Hibiscus syriacus cultivar Beakdansim tig00111408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  724678

Tables:   1   2   3   4   

This is table  3  of  4  ( 397 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498720--498774	21	2.6	21	77	8	58	34	21	20	23	1.97
498762--498934	20	8.6	20	87	5	242	33	28	19	19	1.96
499314--499384	33	2.2	33	92	0	115	11	22	16	49	1.78
499463--499526	21	3.0	20	79	6	74	48	15	18	17	1.81
499545--499601	14	3.7	14	75	20	60	8	24	22	43	1.81
499528--499650	33	3.5	33	85	10	147	9	23	20	46	1.80
499586--499650	21	3.1	21	82	4	96	10	26	15	47	1.78
500394--500485	47	2.0	47	97	0	175	28	23	18	29	1.98
506033--506195	59	2.8	58	84	9	185	42	3	19	34	1.69
506496--506543	24	2.0	24	95	0	87	41	16	10	31	1.82
511532--511685	31	4.9	31	90	3	238	37	21	19	22	1.95
511532--511685	63	2.5	62	91	2	245	37	21	19	22	1.95
512498--512542	21	2.1	21	87	0	63	15	24	28	31	1.96
513909--514097	20	9.4	20	87	2	209	19	17	25	37	1.93
514091--514140	21	2.4	20	80	9	55	26	18	20	36	1.95
521463--521488	2	13.0	2	100	0	52	50	0	0	50	1.00
521892--522059	60	2.8	60	84	7	184	42	3	19	34	1.69
522361--522408	24	2.0	24	95	0	87	41	16	10	31	1.82
525712--525756	2	22.5	2	90	0	72	48	0	2	48	1.13
528275--528389	58	2.0	57	81	13	137	31	19	15	33	1.93
528772--528898	59	2.2	59	90	5	197	31	14	20	33	1.92
535178--535233	20	2.9	19	80	15	71	50	10	17	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535167--535227	20	3.1	20	77	13	72	44	9	22	22	1.82
535386--535457	38	1.9	37	83	5	92	48	2	1	47	1.25
535474--535544	30	2.3	31	95	2	126	38	14	2	45	1.59
536764--536810	19	2.5	19	82	6	60	55	4	2	38	1.31
539919--539960	21	2.0	21	85	0	57	28	19	16	35	1.93
548229--548353	36	3.6	33	73	20	105	63	0	4	31	1.21
556409--556462	28	1.9	28	100	0	108	33	11	25	29	1.91
560488--560524	6	6.2	6	93	0	56	40	48	10	0	1.38
560909--560933	2	12.5	2	100	0	50	52	0	0	48	1.00
567789--567839	22	2.3	22	80	10	59	41	25	5	27	1.78
568552--568580	2	14.5	2	100	0	58	51	0	0	48	1.00
569615--569656	22	1.9	22	85	0	57	38	21	9	30	1.85
569614--569662	22	2.2	22	77	0	53	42	20	8	28	1.80
575085--575125	20	2.0	20	100	0	82	4	24	9	60	1.47
582676--582723	22	2.1	22	84	3	60	25	2	8	64	1.32
582999--583035	19	2.0	19	89	5	58	16	16	0	67	1.23
584223--584339	61	1.9	61	82	3	146	34	23	17	24	1.96
584226--584339	20	5.7	20	80	6	95	32	24	17	25	1.97
584857--584904	19	2.5	19	77	12	53	45	27	16	10	1.80
584900--585026	19	6.7	19	94	0	218	11	22	21	45	1.82
587188--587390	42	4.8	42	79	2	194	22	36	17	22	1.94
587324--587390	21	3.2	21	66	6	55	23	35	20	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587186--587360	84	2.1	84	98	0	341	21	37	17	23	1.94
588748--588783	14	2.6	14	95	0	63	30	0	25	44	1.54
588890--588944	19	3.2	18	70	24	55	45	20	21	12	1.84
588908--588964	14	3.7	14	70	20	51	43	22	22	10	1.84
588890--588979	33	2.7	33	91	0	144	43	21	21	14	1.87
588975--589088	19	6.5	19	72	19	113	12	23	18	45	1.83
588975--589088	52	2.2	52	95	0	201	12	23	18	45	1.83
588992--589111	52	2.3	52	88	1	168	15	21	18	44	1.87
591569--591622	24	2.2	24	90	0	81	40	20	16	22	1.91
592407--592458	21	2.5	21	87	3	70	38	17	23	21	1.93
592447--592520	20	3.7	20	78	3	76	39	22	16	21	1.92
592748--592815	20	3.4	20	72	8	75	39	23	20	16	1.91
592732--592835	40	2.9	34	77	15	109	40	22	22	15	1.91
592842--592909	19	3.8	19	81	12	83	11	22	19	47	1.81
594935--595002	20	3.5	19	82	6	82	38	23	23	14	1.92
594991--595081	14	5.9	14	74	20	83	48	23	17	10	1.79
594975--595086	33	3.4	33	97	1	208	47	22	18	11	1.81
594975--595097	65	1.9	66	91	5	205	47	23	17	11	1.80
595115--595172	14	3.9	14	77	16	62	10	15	24	50	1.75
595098--595188	32	2.8	33	93	3	157	12	17	21	48	1.80
595093--595216	19	7.1	19	69	16	72	13	20	20	45	1.85
595161--595225	20	3.3	20	76	2	69	13	23	21	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595709--595753	18	2.5	18	85	0	63	15	15	42	26	1.87
597073--597131	20	3.0	20	87	0	73	42	22	18	16	1.89
597394--597437	22	2.0	22	95	0	79	18	15	45	20	1.85
597605--597737	20	6.7	20	77	10	103	24	17	24	33	1.96
597605--597740	59	2.3	60	83	2	175	24	16	23	35	1.95
599629--599666	15	2.4	16	86	8	51	36	0	0	63	0.95
600495--600539	22	2.0	22	87	8	65	53	0	2	44	1.13
607207--607231	2	12.5	2	100	0	50	52	0	0	48	1.00
607584--607697	59	1.9	59	94	0	201	27	15	16	40	1.89
608778--608849	30	2.4	30	80	0	81	27	51	11	9	1.69
608781--608845	15	4.3	15	72	0	67	29	50	9	10	1.68
613349--613485	67	2.0	67	94	0	238	43	12	8	35	1.73
614538--614699	60	2.7	60	78	3	182	42	6	21	29	1.77
615003--615055	21	2.5	21	81	6	72	20	26	18	33	1.96
615045--615112	21	3.3	21	91	2	102	39	16	22	22	1.92
615081--615193	20	5.6	20	69	7	68	38	20	19	21	1.93
616893--616983	42	2.2	42	82	7	116	24	15	38	21	1.92
617334--617407	20	3.8	20	92	1	123	35	22	27	14	1.94
617391--617449	19	3.4	19	73	22	74	45	20	20	13	1.84
617391--617463	33	2.2	33	95	0	128	46	20	19	13	1.83
617391--617478	33	2.7	33	87	3	88	47	22	17	12	1.81
617482--617612	19	7.3	19	70	18	84	12	19	22	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617499--617557	14	3.9	14	76	20	64	10	16	23	49	1.77
617482--617573	33	2.8	33	98	0	175	11	18	21	47	1.80
617558--617612	20	2.8	19	83	8	65	16	23	23	36	1.94
618147--618194	18	2.7	18	93	0	87	14	12	45	27	1.81
619514--619572	20	3.0	20	87	0	73	44	22	18	15	1.87
620057--620123	20	3.3	20	82	0	89	29	13	28	28	1.94
620031--620168	41	3.4	41	77	2	152	23	15	24	35	1.94
620051--620165	20	5.7	20	76	6	88	24	16	26	33	1.96
620098--620186	41	2.2	41	83	4	108	20	20	24	34	1.96
620159--620226	21	3.3	21	87	2	93	23	22	14	39	1.91
620216--620268	21	2.5	22	78	6	65	32	18	28	20	1.97
622084--622258	60	2.9	60	77	5	174	42	5	21	30	1.76
624126--624408	139	2.0	138	82	9	335	43	7	7	41	1.61
625065--625271	60	3.5	60	83	2	272	30	21	11	36	1.89
626340--626421	18	4.6	18	87	0	110	23	32	18	25	1.97
626988--627035	19	2.3	20	79	13	53	20	33	16	29	1.95
633353--633387	15	2.3	15	95	0	61	28	31	22	17	1.96
633995--634066	36	2.0	37	94	2	128	20	30	31	16	1.95
637738--638384	323	2.0	323	97	0	1222	29	21	10	37	1.88
639785--639819	15	2.3	15	90	0	61	28	31	22	17	1.96
640427--640498	36	2.0	36	97	0	135	19	31	30	18	1.95
640426--640491	21	3.4	21	67	30	65	21	30	33	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640442--640499	15	3.2	18	66	33	52	17	34	29	18	1.94
641395--641420	13	2.0	13	100	0	52	46	7	0	46	1.31
641862--641936	18	4.2	17	77	13	55	24	32	18	25	1.97
647112--647184	37	2.0	37	83	0	92	49	6	6	36	1.56
650543--650652	31	3.4	31	72	18	107	35	20	22	21	1.96
650544--650668	66	1.9	66	89	0	196	34	23	22	20	1.97
651437--651469	2	16.5	2	100	0	66	51	0	0	48	1.00
651779--652305	261	2.0	260	96	0	964	27	18	14	39	1.89
655055--655162	37	2.9	37	97	0	198	41	12	9	36	1.76
655546--655580	3	11.7	3	100	0	70	34	0	0	65	0.93

Tables:   1   2   3   4