genome.fa.s8554.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008554.1 Hibiscus syriacus cultivar Beakdansim tig00111458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3217407

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  1  of  10  ( 1197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678--703	4	6.5	4	100	0	52	23	0	0	76	0.78
978--1013	16	2.2	16	90	0	54	27	11	5	55	1.57
1431--1469	20	2.0	20	85	14	55	33	5	0	61	1.18
10184--10226	18	2.4	18	84	0	59	69	0	9	20	1.15
10850--11037	76	2.5	76	96	1	342	57	13	1	27	1.45
12827--12869	11	4.0	11	87	6	70	72	2	9	16	1.21
12829--12886	23	2.6	22	89	5	82	74	3	6	15	1.17
18343--18371	15	1.9	15	100	0	58	68	6	0	24	1.13
19940--20000	26	2.4	27	75	8	65	40	9	3	45	1.53
20328--20370	22	2.0	22	90	0	68	37	13	25	23	1.92
22349--22536	76	2.5	75	94	1	322	58	11	1	28	1.40
22349--22572	76	3.0	74	88	5	317	58	10	1	29	1.42
41695--41753	30	2.0	30	83	12	77	54	20	0	25	1.45
45166--45259	28	3.3	27	85	7	116	40	1	14	43	1.53
45165--45318	58	2.7	58	78	4	143	38	3	12	45	1.59
45212--45346	29	4.7	27	81	9	126	37	5	9	46	1.61
45216--45346	58	2.3	58	78	5	140	38	6	9	45	1.62
46807--46899	40	2.3	40	94	0	159	22	27	24	24	2.00
46987--47172	46	4.1	46	86	2	270	39	6	21	32	1.80
46987--47172	91	2.1	90	89	3	284	39	6	21	32	1.80
49916--49976	10	6.0	10	78	14	63	83	1	14	0	0.72
49916--49975	16	3.8	15	85	10	84	83	1	15	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49916--49976	26	2.4	25	86	2	86	83	1	14	0	0.72
54019--54204	46	4.1	45	87	5	268	38	6	22	31	1.81
54019--54204	91	2.1	90	87	5	268	38	6	22	31	1.81
55260--55296	14	2.6	14	100	0	74	40	0	35	24	1.55
61955--61981	11	2.5	11	100	0	54	55	7	7	29	1.55
62617--62684	35	1.9	35	88	5	102	32	1	26	39	1.65
67549--67602	28	1.9	28	100	0	108	33	11	16	38	1.84
69621--70188	85	6.7	85	84	1	636	24	17	22	35	1.95
69621--70188	171	3.3	171	82	2	714	24	17	22	35	1.95
69679--70172	256	1.9	256	84	2	652	24	17	22	35	1.95
75597--75657	28	2.2	28	96	0	113	34	9	16	39	1.82
76899--77258	137	2.6	137	83	2	463	26	28	16	28	1.97
78161--78236	29	2.6	29	93	4	127	31	19	3	44	1.69
78213--78467	131	1.9	131	94	0	447	21	16	16	45	1.85
78574--78622	16	3.1	16	91	5	73	26	36	10	26	1.88
78659--78702	16	2.9	15	76	6	52	25	11	6	56	1.58
97268--97308	17	2.4	17	87	0	64	12	26	31	29	1.92
99933--100211	80	3.5	80	85	4	373	21	21	25	31	1.98
104439--104710	80	3.4	80	87	5	388	21	20	25	32	1.98
106446--106506	19	3.2	19	79	4	70	39	8	13	39	1.74
111078--111222	21	6.8	20	80	9	101	27	14	21	36	1.92
111065--111198	42	3.1	42	82	5	144	26	15	22	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118134--118299	21	7.8	21	71	2	116	25	12	24	37	1.90
118176--118308	65	2.0	65	83	8	164	24	12	24	39	1.89
124514--124593	31	2.6	31	86	4	108	40	6	22	31	1.79
124939--124972	9	3.8	9	88	0	50	35	5	11	47	1.65
124938--124987	18	2.8	18	85	8	66	34	12	10	44	1.75
131147--131217	30	2.3	31	82	2	90	39	5	23	30	1.78
131567--131615	18	2.8	17	79	14	55	32	12	10	44	1.75
132092--132144	12	4.8	11	76	15	56	22	20	13	43	1.86
132083--132130	22	2.2	22	88	7	71	22	22	14	39	1.91
138012--138040	13	2.2	13	100	0	58	41	6	20	31	1.79
138848--138901	19	2.8	19	82	2	63	38	12	12	35	1.82
140872--141577	355	2.0	347	96	3	1299	30	13	16	40	1.86
150522--150592	17	4.2	17	77	13	58	38	9	12	39	1.77
150556--150591	18	2.0	18	89	10	56	41	13	5	38	1.68
153547--153575	14	2.0	15	93	6	51	17	6	6	68	1.34
160550--160579	15	2.1	15	93	6	53	23	13	30	33	1.93
166432--166461	14	2.1	14	100	0	60	43	20	20	16	1.88
192326--192381	21	2.7	21	88	0	85	32	19	19	28	1.97
196020--196175	31	5.0	31	93	1	260	37	21	19	20	1.94
197105--197149	21	2.1	21	87	0	63	15	24	28	31	1.96
200296--200420	31	4.0	31	92	2	198	36	23	20	20	1.95
201350--201394	21	2.1	21	87	0	63	15	24	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203502--203533	11	2.8	12	90	9	50	25	25	9	40	1.85
218942--219076	41	3.1	42	82	9	157	28	20	6	43	1.77
218961--219121	41	3.8	42	80	8	157	27	18	5	48	1.70
220153--220467	172	1.8	173	88	2	490	41	12	13	33	1.80
222598--222642	21	2.1	21	83	0	54	31	31	22	15	1.95
223591--223684	31	3.0	31	92	3	145	20	19	23	37	1.94
227330--227411	32	2.6	31	88	3	119	19	18	21	40	1.92
231750--231840	30	3.0	30	87	7	123	19	18	23	38	1.93
234902--234946	21	2.1	21	83	0	54	31	31	22	15	1.95
235900--235992	30	3.0	31	89	6	136	20	19	22	37	1.94
239516--239561	21	2.2	21	88	0	65	26	39	26	8	1.85
242048--242155	45	2.4	45	98	0	207	48	13	3	34	1.61
246680--246720	14	2.9	15	76	23	52	56	7	0	36	1.27
246993--247045	26	2.0	26	96	0	97	22	37	11	28	1.89
248481--248506	12	2.2	12	100	0	52	50	7	0	42	1.31
258339--258405	6	10.8	6	81	12	64	25	0	74	0	0.82
258360--258412	14	4.0	14	76	20	51	33	0	66	0	0.92
258353--258411	12	5.3	11	79	16	52	30	0	69	0	0.89
260311--260338	3	9.3	3	100	0	56	64	0	0	35	0.94
268827--269010	87	2.1	87	93	0	314	33	28	15	22	1.95
268914--269208	118	2.5	121	87	5	445	35	26	14	22	1.93
269122--269235	34	3.4	34	67	9	90	39	28	12	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269116--269274	66	2.4	66	88	0	237	36	26	13	23	1.92
269154--269270	32	3.6	31	69	13	92	36	29	13	20	1.91
270051--270101	14	3.8	13	80	10	59	37	3	0	58	1.16
272702--272747	14	3.4	14	79	5	51	41	6	0	52	1.27
272726--272875	75	2.0	75	98	0	291	24	15	10	50	1.74
275614--275945	49	6.8	49	91	0	520	28	20	14	37	1.91
277349--277408	14	4.5	13	76	18	52	15	1	6	76	1.06
277357--277408	15	3.5	15	84	5	70	13	0	7	78	0.94
277331--277412	29	2.8	29	81	10	87	15	3	4	75	1.11
277330--277409	5	15.8	5	69	20	51	16	2	5	76	1.07
277437--277478	21	1.9	21	85	9	57	21	2	4	71	1.16
279414--279473	25	2.6	23	77	15	61	20	3	1	75	1.04
283518--284432	124	7.4	124	88	0	1319	33	23	15	26	1.95
284349--284490	58	2.4	58	90	2	214	32	23	14	29	1.94
286191--286256	30	2.2	30	97	0	123	22	18	25	33	1.97
289246--289276	3	10.3	3	100	0	62	67	0	0	32	0.91
291085--291151	30	2.2	30	97	0	125	22	17	26	32	1.96
292759--292816	3	17.7	3	83	16	55	32	0	0	67	0.91
292759--292816	7	8.7	7	76	14	52	32	0	0	67	0.91
293473--293532	25	2.6	23	77	15	61	20	3	1	75	1.04
295591--295626	16	2.2	16	100	0	72	41	19	11	27	1.85
296044--296080	19	2.0	18	89	5	56	56	10	5	27	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297097--297156	30	2.0	31	90	6	97	35	6	16	41	1.75
297236--297297	21	3.0	20	84	9	81	20	37	19	22	1.95
297301--297374	20	3.7	19	80	10	85	18	25	24	31	1.98
300605--300673	30	2.2	30	85	15	95	34	5	17	42	1.73
300614--300673	30	2.0	30	93	6	104	33	6	16	43	1.74
300753--300809	20	2.8	21	83	2	80	22	35	19	22	1.96
300794--300869	20	3.7	21	84	11	88	25	31	22	21	1.98
300890--300957	20	3.3	20	79	4	82	19	27	22	30	1.97
302794--302847	24	2.2	24	80	0	63	46	14	12	25	1.81
305043--305072	15	1.9	16	93	6	53	40	13	6	40	1.71

Tables:   1   2   3   4   5   6   7   8   9   10