genome.fa.s8560.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008560.1 Hibiscus syriacus cultivar Beakdansim tig00111467_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  753118

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 507 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341575--341650	21	3.3	21	68	25	64	30	13	18	38	1.89
342101--342142	18	2.4	18	88	4	59	16	23	30	28	1.96
342108--342150	18	2.4	18	84	0	59	23	25	32	18	1.97
345840--345893	24	2.3	23	81	12	67	55	7	1	35	1.39
346542--346617	37	2.1	37	89	0	116	46	21	9	23	1.80
352105--352151	19	2.3	21	82	7	62	46	6	2	44	1.40
352783--352861	33	2.4	33	91	2	133	24	49	15	11	1.77
352906--352968	22	2.9	22	95	0	108	25	34	17	22	1.95
352983--353027	23	2.0	23	100	0	90	22	20	26	31	1.98
353451--353512	28	2.1	30	94	5	110	30	0	12	56	1.37
353805--353849	21	2.2	21	84	4	56	35	0	8	55	1.31
357063--357089	10	2.7	10	100	0	54	40	0	18	40	1.51
357089--357138	21	2.3	22	80	10	59	40	0	8	52	1.31
357010--357142	58	2.2	60	90	4	216	39	0	12	47	1.42
357216--357522	60	5.3	60	86	8	467	40	0	12	46	1.44
357404--357518	48	2.3	49	89	2	178	40	0	11	46	1.45
357490--357537	14	3.6	14	81	16	66	35	0	16	47	1.47
357490--357538	25	2.0	25	95	0	89	36	0	16	46	1.47
357611--357751	21	6.7	21	65	20	55	41	0	13	45	1.43
357649--357736	14	6.2	14	72	18	58	39	0	12	47	1.41
357611--357923	60	5.3	60	91	4	530	40	0	12	46	1.42
357671--357751	11	7.4	11	72	23	55	39	0	16	44	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357611--357923	116	2.7	118	94	3	544	40	0	12	46	1.42
357010--358006	391	2.6	388	91	5	1702	40	3	12	44	1.58
357844--357870	10	2.7	10	100	0	54	40	0	18	40	1.51
357870--357919	21	2.3	22	80	10	59	40	0	8	52	1.31
360135--360165	15	2.1	14	94	5	53	54	6	0	38	1.26
360140--360186	16	3.0	16	84	9	53	59	10	0	29	1.31
360629--360675	14	3.5	13	77	11	51	2	40	0	57	1.11
360682--360732	26	2.0	26	96	0	93	7	33	7	50	1.60
360939--361026	29	3.0	29	89	0	122	14	23	39	21	1.91
360974--361069	29	3.1	31	85	7	117	14	14	45	25	1.83
363850--363904	28	1.9	29	85	3	76	49	12	5	32	1.64
368710--368762	24	2.2	24	79	0	61	54	15	3	26	1.57
371754--371910	76	2.1	77	97	1	298	29	25	17	27	1.98
376712--376789	31	2.7	29	83	14	106	53	6	14	25	1.64
382907--382974	29	2.3	30	85	12	88	45	8	4	41	1.55
387198--387260	2	31.5	2	100	0	126	50	0	0	49	1.00
388578--389424	256	3.3	256	84	3	1080	28	15	20	34	1.94
388578--389527	256	3.7	253	79	8	954	28	16	20	35	1.94
401380--401413	15	2.3	15	89	0	50	50	8	2	38	1.49
405735--405764	6	5.0	6	100	0	60	83	0	0	16	0.65
405758--405805	21	2.3	21	82	10	62	66	6	8	18	1.39
409676--409705	9	3.2	9	90	9	51	20	20	0	60	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410718--410882	64	2.6	65	83	4	203	30	23	17	28	1.97
413003--413043	21	1.9	22	90	5	66	56	4	7	31	1.48
416852--416929	23	3.5	22	74	13	79	28	25	21	24	1.99
419519--419682	64	2.5	65	81	4	181	29	22	17	30	1.96
421222--421333	7	16.0	7	75	10	68	76	1	16	5	1.05
421223--421338	8	13.1	8	67	20	54	76	1	15	6	1.06
421230--421262	11	3.1	11	91	4	50	81	6	12	0	0.85
423734--423947	117	1.8	118	87	3	324	36	11	25	26	1.90
423734--423974	117	2.1	118	84	2	315	36	13	24	25	1.92
424161--424774	118	5.2	118	81	4	677	36	14	22	26	1.92
424161--424767	237	2.6	236	82	5	692	36	14	22	26	1.92
424759--424990	42	5.7	40	77	7	191	31	25	16	26	1.97
425348--425391	12	3.6	12	87	3	61	50	40	9	0	1.34
429228--429273	18	2.5	19	75	10	51	32	34	4	28	1.77
435723--435753	16	1.9	16	93	0	53	87	0	12	0	0.55
436378--436416	20	2.0	20	89	0	60	33	10	23	33	1.88
439869--440011	68	2.1	68	94	0	250	34	24	12	28	1.92
451192--451241	25	2.1	23	81	7	55	58	2	0	40	1.10
451209--451352	79	1.8	77	81	11	177	44	5	4	45	1.48
457422--457465	18	2.4	18	81	7	54	40	6	6	45	1.57
459917--460519	36	16.6	36	79	10	466	38	15	19	27	1.91
459940--460314	101	3.6	100	84	7	439	39	13	20	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460109--460526	39	11.0	39	89	3	495	37	16	18	27	1.92
460529--460749	76	2.9	76	83	2	291	39	15	14	31	1.87
460702--460798	39	2.4	39	83	6	115	34	19	15	30	1.93
460723--460803	39	2.1	39	88	4	119	37	20	16	25	1.93
464899--464956	29	1.9	29	86	6	80	55	10	17	17	1.69
474353--474393	21	2.0	21	95	0	73	48	9	12	29	1.72
475228--475701	100	4.8	100	76	9	305	35	10	19	33	1.87
475228--475888	199	3.3	195	76	10	529	34	11	20	33	1.88
475228--475882	100	6.6	100	77	5	285	34	11	20	33	1.88
475246--475788	299	1.8	299	79	5	641	35	10	20	33	1.86
481169--481217	20	2.5	20	93	0	80	53	20	12	14	1.73
481684--481735	25	2.1	25	100	0	104	32	15	15	36	1.89
494553--494583	16	1.9	16	93	0	53	32	6	25	35	1.82
499843--499894	27	1.9	27	92	0	86	32	19	28	19	1.96
506874--506960	20	4.3	20	85	0	111	39	19	18	22	1.93
507471--507528	20	2.9	20	97	0	107	51	18	13	15	1.76
507475--507555	20	4.3	20	74	17	84	49	23	14	12	1.77
507559--507609	20	2.5	20	77	0	57	15	13	19	50	1.77
509111--509160	21	2.4	21	93	0	82	20	14	32	34	1.92
510814--510852	20	2.0	20	89	0	60	20	17	17	43	1.88
513570--513603	12	2.8	12	90	0	50	14	0	26	58	1.36
514179--514216	16	2.5	15	84	12	51	65	0	5	28	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514373--514453	20	4.1	20	73	6	67	39	11	18	30	1.86
514445--514493	20	2.5	20	82	0	62	34	8	28	28	1.86
514377--514455	40	2.0	40	85	5	106	40	11	18	29	1.86
514484--514553	20	3.5	20	90	2	113	30	15	25	28	1.96
514580--514620	20	2.0	20	85	0	55	31	9	29	29	1.89
514607--514656	19	2.6	19	83	3	55	26	14	26	34	1.94
518883--518927	21	2.1	21	84	8	56	37	4	20	37	1.73
519386--519441	2	28.5	2	96	3	105	48	0	0	51	1.00
525192--525302	3	34.7	3	72	12	78	36	1	4	57	1.29
525208--525302	16	5.9	16	82	0	109	33	2	5	58	1.32
525224--525303	29	2.8	29	82	3	90	35	2	3	58	1.29
525192--525309	13	9.4	13	69	12	77	37	1	4	56	1.29
525933--525978	20	2.3	20	79	20	53	69	19	6	4	1.28
526132--526454	159	2.0	159	99	0	637	30	16	26	26	1.97
526675--526823	76	2.0	76	93	2	255	21	16	16	44	1.86
527522--527583	11	5.5	11	75	11	63	22	0	1	75	0.88
527519--527583	22	3.0	21	86	8	85	24	0	1	73	0.91
527522--527562	6	7.2	6	78	10	50	21	0	0	78	0.76
529398--529448	22	2.3	22	96	0	93	33	19	35	11	1.88
555018--555061	23	1.9	23	95	0	79	25	22	18	34	1.96
557199--557230	15	2.1	15	94	0	55	18	0	25	56	1.42
559404--559442	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560889--560917	14	2.1	14	100	0	58	37	20	13	27	1.91
565009--565200	88	2.2	88	87	5	273	25	21	16	36	1.94
565387--565429	20	2.1	20	87	12	61	39	18	16	25	1.91
566019--566067	22	2.2	22	100	0	98	38	16	12	32	1.86
566264--566314	24	2.1	25	82	10	61	25	13	15	45	1.83
572784--572817	16	2.1	17	88	5	52	2	26	0	70	1.01
573901--573932	2	16.0	2	100	0	64	50	0	0	50	1.00
577300--577419	43	2.8	43	93	1	197	30	42	5	22	1.75
577328--577521	48	4.1	48	82	3	193	30	34	6	27	1.83
579898--580025	66	1.9	66	84	9	172	35	22	17	23	1.95

Tables:   1   2   3   4   5