genome.fa.s8560.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008560.1 Hibiscus syriacus cultivar Beakdansim tig00111467_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  753118

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 507 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
742552--742705	21	7.7	20	69	7	71	37	24	18	20	1.94
742673--742980	20	15.5	20	80	6	77	34	26	19	20	1.96
742673--743059	40	9.7	40	87	3	428	35	25	18	20	1.95
742711--743059	20	17.6	19	84	5	387	34	25	18	21	1.96
743720--743765	24	2.0	23	87	12	67	26	15	21	36	1.93
746248--746490	19	13.7	19	83	15	324	46	16	22	14	1.84
746248--746512	52	5.0	52	90	7	428	45	16	22	14	1.84
746519--746601	20	4.6	19	81	15	113	14	24	18	43	1.87
746709--746745	14	2.6	14	91	0	65	45	21	0	32	1.52
748109--748173	22	3.0	22	70	4	69	20	18	38	23	1.93
748109--748176	21	3.2	21	70	2	64	19	19	36	25	1.94
748615--748679	18	3.4	19	83	10	80	44	27	16	10	1.81
748615--748746	19	7.6	19	72	21	101	45	24	18	11	1.82
748650--748741	33	2.9	31	91	4	157	47	21	19	10	1.80
748700--748724	12	2.1	12	100	0	50	48	24	20	8	1.76
748742--748870	19	7.3	19	75	17	125	8	17	28	45	1.77
748742--748833	33	2.8	33	93	3	150	7	18	28	45	1.76
748912--749285	91	4.1	93	95	3	674	46	18	12	22	1.83
750959--751072	33	3.5	33	92	2	203	44	21	24	9	1.82
750966--751077	14	6.8	18	73	22	95	42	22	25	9	1.84
751089--751143	14	3.6	14	73	21	56	9	25	23	41	1.83
751073--751143	33	2.2	33	94	0	124	8	22	25	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
751084--751165	33	2.5	33	89	2	119	9	25	21	42	1.84
751096--751184	20	4.8	20	72	19	75	12	24	19	43	1.85
751261--751331	33	2.2	33	89	0	106	46	19	22	11	1.81
751507--751561	22	2.5	22	81	0	74	20	16	40	23	1.91
751706--751897	20	9.6	20	79	6	201	19	19	25	35	1.95

Tables:   1   2   3   4   5

The End!