genome.fa.s8639.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008639.1 Hibiscus syriacus cultivar Beakdansim tig00111614_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1076872

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 690 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
950569--950656	36	2.4	37	79	14	92	76	1	3	19	1.00
950639--950760	46	2.7	45	74	17	119	63	2	2	31	1.20
950742--950793	2	26.5	2	88	3	79	48	1	1	48	1.24
951322--951392	37	1.9	37	97	0	133	29	14	15	40	1.86
951901--951985	36	2.4	36	92	2	136	31	8	18	41	1.80
952038--952370	36	9.3	36	77	13	323	41	12	19	26	1.87
952038--952254	78	2.9	75	83	6	239	42	13	19	23	1.87
952180--952363	101	1.8	100	87	3	271	41	11	18	28	1.85
952472--952701	116	2.0	116	88	3	347	25	20	23	30	1.98
954376--954453	10	8.0	9	72	16	50	2	16	2	78	0.98
954377--954453	12	6.7	11	73	15	59	2	16	2	77	0.99
954377--954446	24	2.9	24	74	18	72	2	17	2	77	1.02
954416--954464	20	2.5	19	81	12	55	4	14	2	79	0.97
957613--957661	19	2.6	19	84	9	57	24	28	20	26	1.99
963321--963401	24	3.5	24	70	20	75	22	24	23	29	1.99
964946--964989	21	2.1	21	82	0	52	9	43	15	31	1.79
965835--965876	21	1.9	23	85	9	61	38	4	9	47	1.57
966212--966260	19	2.6	19	84	9	57	24	28	20	26	1.99
967384--967416	13	2.6	13	90	4	50	78	3	0	18	0.87
967333--967464	29	4.5	31	69	18	84	72	0	3	23	1.03
967374--967432	14	3.7	15	80	17	57	74	1	1	22	1.00
967411--967524	38	2.8	40	76	11	117	64	1	4	29	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968075--968182	37	2.9	37	91	0	180	33	12	13	40	1.82
969072--969128	15	3.7	14	78	17	60	19	36	28	15	1.92
969086--969140	17	3.4	16	80	10	58	21	34	27	16	1.95
969072--969140	32	2.2	32	91	0	111	20	34	27	17	1.95
970817--970864	2	24.0	2	100	0	96	50	0	0	50	1.00
973087--973139	16	3.2	16	72	5	52	30	1	26	41	1.66
977683--977895	103	2.1	103	95	0	390	25	13	23	36	1.92
977919--977979	23	2.7	23	84	0	77	21	24	26	27	1.99
991673--991739	35	2.0	35	85	5	93	22	11	22	43	1.86
993992--994194	103	2.0	102	88	4	302	23	10	24	40	1.86
1000486--1000532	22	2.1	22	100	0	94	38	8	4	48	1.53
1001721--1001795	32	2.4	31	80	4	80	40	4	8	48	1.51
1001872--1001896	2	12.5	2	100	0	50	48	0	0	52	1.00
1003374--1003465	29	3.1	29	70	14	89	35	22	4	36	1.74
1003584--1003722	60	2.3	60	87	4	199	35	5	23	35	1.77
1003584--1003758	60	2.9	60	80	11	164	38	5	21	34	1.77
1006231--1006269	20	2.0	20	100	0	78	25	25	17	30	1.97
1011231--1011283	25	2.0	27	85	10	74	64	0	1	33	1.05
1015067--1015175	24	4.7	24	76	11	95	29	21	22	27	1.99
1021085--1021135	19	2.7	19	100	0	102	31	15	31	21	1.95
1026860--1026910	24	2.1	24	82	7	59	62	0	3	33	1.13
1028383--1028422	19	2.1	19	90	0	62	17	22	17	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028603--1028658	25	2.2	25	87	6	78	33	3	1	60	1.24
1036697--1036746	2	25.0	2	100	0	100	50	0	50	0	1.00
1037041--1037165	60	2.1	61	86	4	173	50	4	12	32	1.60
1038652--1038710	29	2.0	29	96	0	109	25	13	11	49	1.76
1043337--1043395	29	2.0	29	100	0	118	23	13	13	49	1.78
1051835--1051878	20	2.1	21	95	4	81	25	29	29	15	1.96
1051868--1051942	17	4.4	17	98	0	141	14	24	44	17	1.86
1051835--1051878	7	6.4	7	94	5	81	25	29	29	15	1.96
1051938--1051987	9	5.1	10	74	13	50	28	30	22	20	1.98
1051936--1051987	20	2.7	19	87	3	68	26	28	25	19	1.98
1058183--1058304	31	3.9	31	73	4	93	26	29	27	17	1.97
1058184--1058304	63	1.9	63	83	6	156	25	29	27	17	1.97
1059181--1059243	13	5.0	13	81	12	78	23	28	31	15	1.96
1059177--1059243	20	3.5	19	84	9	84	23	28	31	16	1.96
1059217--1059290	17	4.4	17	96	0	121	17	24	40	17	1.91
1059177--1059227	7	7.6	7	86	8	79	27	29	27	15	1.96
1059307--1059344	20	1.9	20	94	0	67	34	26	21	18	1.96
1059300--1059343	9	4.7	9	83	10	61	31	29	22	15	1.95
1063606--1063632	3	9.0	3	100	0	54	66	0	0	33	0.92
1064065--1064124	28	2.2	27	84	3	75	46	8	3	41	1.50
1064654--1064785	59	2.2	60	86	4	187	26	25	8	40	1.84
1066676--1066702	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1067105--1067147	18	2.5	17	81	7	52	69	2	2	25	1.12
1067107--1067145	14	2.8	13	88	11	51	71	2	2	23	1.10
1068305--1068859	105	5.3	105	92	1	850	22	17	26	32	1.96
1069461--1069914	65	6.7	65	72	11	284	38	11	20	30	1.87
1069593--1069855	36	7.4	36	76	9	245	39	12	19	28	1.88
1069545--1069914	138	2.7	138	83	0	463	38	11	19	30	1.88
1069629--1069813	102	1.8	102	84	2	255	39	12	17	29	1.88
1070277--1070312	18	2.0	18	88	0	54	41	30	8	19	1.81
1070706--1070760	22	2.5	22	96	0	101	23	12	25	38	1.90
1071380--1071432	13	4.2	12	80	4	61	0	9	5	84	0.76
1071369--1071422	24	2.3	25	84	9	69	0	14	7	77	0.97
1071380--1071437	8	7.2	8	80	16	59	0	10	5	84	0.77
1071386--1071437	11	5.1	10	76	19	54	0	9	5	84	0.77
1071410--1071451	16	2.6	16	81	7	50	2	16	4	76	1.07
1071371--1071446	31	2.4	33	79	18	90	0	15	6	77	0.96
1071380--1071439	15	3.9	15	76	22	54	0	11	6	81	0.86
1072613--1072651	8	5.0	8	84	6	53	58	12	17	10	1.61
1072613--1072651	15	2.5	15	87	4	51	58	12	17	10	1.61
1074025--1074051	14	1.9	14	100	0	54	81	0	0	18	0.69
1075153--1075186	9	3.8	9	88	11	52	76	0	2	20	0.92
1075152--1075186	13	2.6	13	90	4	52	77	0	2	20	0.90
1075236--1075262	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1075458--1075503	23	1.9	23	82	8	56	54	2	4	39	1.32
1076846--1076870	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6

The End!