genome.fa.s8660.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008660.1 Hibiscus syriacus cultivar Beakdansim tig00111657_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1057077

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 490 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294514--294575	8	8.0	8	71	20	51	0	8	9	82	0.85
294516--294560	16	2.8	15	90	10	63	0	11	8	80	0.92
294533--294575	22	2.0	22	90	4	70	0	4	9	86	0.71
294503--294563	19	3.4	18	77	13	63	0	11	9	78	0.96
294548--294574	13	2.1	13	100	0	54	0	0	7	92	0.38
294923--294961	15	2.5	15	87	4	51	66	5	12	15	1.41
306181--306235	24	2.3	24	90	3	85	7	14	16	61	1.54
307009--307060	23	2.3	23	100	0	104	23	11	42	23	1.86
313796--313820	12	2.1	12	100	0	50	8	48	0	44	1.32
319817--319881	13	5.4	12	75	21	57	29	3	35	32	1.73
319786--319912	36	3.7	35	86	8	163	29	3	35	32	1.73
320251--320301	19	2.6	20	87	3	68	45	5	15	33	1.71
323897--323965	33	2.1	33	83	5	86	31	1	36	30	1.67
323951--324047	13	8.0	12	72	22	62	28	3	37	30	1.73
323936--324048	36	3.2	36	92	1	174	27	3	36	32	1.74
324384--324434	19	2.6	20	87	3	68	45	5	15	33	1.71
325750--325816	14	4.9	13	72	20	57	74	2	20	1	1.03
325762--325817	22	2.4	22	82	8	67	73	1	23	1	1.03
330980--331018	19	2.0	20	90	5	62	20	15	0	64	1.30
331674--331708	17	2.0	17	88	5	52	68	0	20	11	1.20
331918--331955	20	1.9	20	84	10	51	5	10	0	84	0.77
333824--333879	23	2.4	23	77	11	60	62	0	25	12	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333839--333876	11	3.2	12	85	7	51	65	0	28	5	1.14
334024--334134	35	3.2	35	83	2	134	30	3	37	27	1.74
338824--338865	8	5.0	8	81	18	50	2	23	0	73	0.94
350894--350936	20	2.2	20	87	4	61	34	9	6	48	1.62
351331--351370	19	2.0	20	90	4	64	20	15	0	65	1.28
351880--351926	24	2.0	23	84	15	62	31	0	31	36	1.58
355906--355944	15	2.5	15	83	4	51	0	10	2	87	0.65
356325--356371	24	2.0	23	84	15	62	31	0	31	36	1.58
357083--357120	18	2.1	18	90	0	58	21	10	36	31	1.87
363156--363191	18	1.9	18	88	5	54	11	11	2	75	1.16
363499--363536	18	2.1	18	90	0	58	21	10	36	31	1.87
365717--365782	11	5.9	11	72	10	53	80	3	15	1	0.91
365717--365782	5	11.7	6	73	15	52	80	3	15	1	0.91
365720--365783	32	2.0	33	84	9	87	78	3	15	3	1.01
372100--372143	8	5.5	8	86	8	63	0	20	2	77	0.88
373758--373791	2	17.5	2	93	6	61	50	0	0	50	1.00
374315--374372	30	1.9	31	85	3	82	27	8	8	55	1.60
380769--380811	24	1.9	21	86	13	59	18	11	0	69	1.17
381671--381952	95	3.0	95	93	1	485	43	16	18	21	1.88
382944--383076	13	10.9	13	66	19	63	29	3	34	32	1.75
382925--383101	36	4.9	36	91	3	286	28	4	35	31	1.77
382959--383062	23	4.4	23	65	27	65	27	3	35	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386896--387116	36	6.2	36	96	0	381	32	36	4	27	1.76
387565--387613	14	3.1	15	85	14	64	77	0	14	8	0.98
391082--391302	36	6.2	36	96	0	381	32	35	4	27	1.77
393201--393245	14	2.9	15	80	12	56	4	13	6	75	1.15
393714--393845	13	11.0	12	67	24	66	28	3	36	31	1.75
393695--393868	36	4.9	36	90	3	266	28	4	36	29	1.77
393705--393867	71	2.3	70	93	2	283	28	4	37	29	1.76
397779--397823	14	2.9	15	80	12	56	4	13	6	75	1.15
398290--398421	13	11.0	12	67	24	66	28	3	36	31	1.75
398271--398446	36	4.9	36	91	2	284	28	4	36	30	1.77
398271--398445	71	2.5	72	92	2	300	29	4	36	30	1.76
402871--403003	13	11.0	12	70	24	68	28	3	35	32	1.75
402854--403028	36	4.9	36	90	0	271	29	4	34	31	1.78
402868--403025	23	6.6	22	71	23	99	28	3	35	32	1.75
405012--405047	15	2.4	16	90	9	58	63	0	25	11	1.27
408629--408696	35	1.9	36	87	3	102	30	36	2	29	1.72
409143--409171	14	2.0	15	93	6	51	79	0	20	0	0.74
412564--412648	11	7.2	11	72	22	66	31	36	3	28	1.74
412561--412665	36	2.9	36	95	1	185	30	36	4	28	1.78
416569--416614	15	2.9	16	84	12	60	60	0	30	8	1.26
418134--418180	19	2.6	18	83	12	60	65	0	14	19	1.26
420004--420046	23	1.9	22	90	4	68	16	9	4	69	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420390--420447	18	3.2	18	80	9	64	79	13	6	0	0.93
420419--420447	9	3.3	9	95	4	51	72	20	6	0	1.07
423782--423833	19	2.6	20	87	6	70	42	5	13	38	1.68
425546--425582	15	2.4	16	90	4	58	13	10	5	70	1.32
425933--425978	9	5.0	9	76	23	51	84	10	4	0	0.75
425934--425959	11	2.4	11	100	0	52	92	7	0	0	0.39
425934--425986	20	2.8	18	81	18	63	83	11	5	0	0.81
425930--425996	28	2.4	28	76	2	80	74	11	4	8	1.19
430254--430290	15	2.4	16	90	4	58	13	10	5	70	1.32
432297--432352	20	2.8	20	100	0	112	39	14	5	41	1.68
433204--433249	13	3.4	14	76	14	51	78	2	17	2	0.96
433202--433259	26	2.2	27	75	9	66	72	5	18	3	1.18
436723--436826	33	3.1	33	82	9	95	30	36	1	30	1.69
437709--437762	23	2.3	24	87	3	83	62	12	14	9	1.53
444313--444398	13	7.2	12	72	22	58	29	3	37	30	1.74
444295--444399	36	2.9	36	95	1	185	28	4	36	30	1.78
453215--453259	23	2.0	23	86	8	65	51	8	6	33	1.59
456667--456824	13	13.2	12	70	24	88	28	3	37	30	1.75
456649--456825	36	4.9	36	95	0	311	28	4	36	30	1.77
456649--456822	23	7.3	24	70	22	93	28	4	36	31	1.76
460705--460862	13	13.2	12	70	24	88	28	4	36	30	1.77
460687--460863	36	4.9	36	92	0	293	28	5	36	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460687--460860	23	7.4	22	71	22	97	28	4	36	31	1.77
466637--466776	36	3.9	36	89	0	201	28	36	4	30	1.76
470774--470945	13	14.5	11	71	25	113	27	4	34	33	1.76
470776--470978	23	8.5	24	69	25	121	28	3	34	32	1.76
470760--470978	36	6.2	36	90	2	336	27	4	35	33	1.76
470760--470978	106	2.1	106	89	2	332	27	4	35	33	1.76
471318--471368	19	2.6	20	87	3	68	45	5	15	33	1.71
471819--471865	14	3.1	15	75	12	51	72	6	19	2	1.17
479921--479972	21	2.6	21	90	6	81	32	13	7	46	1.72
488383--488430	10	4.5	10	82	12	60	0	4	10	85	0.73
488400--488429	13	2.3	13	100	0	60	0	0	6	93	0.35
492088--492147	30	2.0	31	83	3	77	26	8	8	56	1.57
492989--493039	20	2.6	20	90	3	77	35	15	5	43	1.71
493747--493810	17	3.6	18	76	19	62	71	7	15	4	1.26
496131--496190	30	2.0	31	83	3	77	26	8	8	56	1.57
497100--497150	20	2.6	20	90	3	77	35	15	5	43	1.71
512036--512060	13	1.9	13	100	0	50	0	0	12	88	0.53
527830--527882	22	2.7	18	75	25	54	56	0	32	11	1.35
527837--527886	22	2.3	22	100	0	100	60	0	32	8	1.26
528036--528151	35	3.3	35	87	1	160	31	2	36	30	1.71
528889--528968	35	2.2	37	86	4	110	27	2	36	33	1.70
532231--532283	16	3.2	16	77	17	56	66	0	18	15	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532838--532884	11	4.1	11	80	20	60	25	2	36	36	1.68
532838--532884	24	2.0	24	84	15	64	25	2	36	36	1.68
532838--532917	35	2.2	37	88	4	119	27	2	37	32	1.70
533256--533306	19	2.6	20	87	3	68	45	5	15	33	1.71
537251--537355	36	2.9	36	91	1	167	31	34	4	29	1.78
541025--541070	19	2.3	20	85	3	58	34	15	6	43	1.72
542927--542976	17	2.9	17	82	11	57	0	12	10	78	0.98
543347--543495	36	4.1	36	86	3	210	31	4	36	28	1.76
543382--543485	25	4.4	22	68	21	68	31	4	34	28	1.78
547688--547757	34	2.1	32	89	5	104	21	31	15	31	1.95

Tables:   1   2   3   4   5