Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008660.1 Hibiscus syriacus cultivar Beakdansim tig00111657_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1057077

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 490 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1031213--1031257
16
2.8
16
93
0
72
11
20
26
42
1.85
1036410--1036466
3
18.7
3
85
7
71
68
1
0
29
1.00
1036394--1036463
23
3.2
22
84
12
90
68
1
0
30
0.98
1036717--1036896
97
1.9
97
86
2
263
25
15
28
31
1.96
1036891--1037017
34
3.8
34
73
14
120
37
17
18
26
1.92
1037092--1037169
37
2.1
36
83
6
95
39
12
16
30
1.86
1036895--1037143
67
3.8
66
86
2
322
39
13
18
28
1.89
1049948--1050009
25
2.4
25
81
7
72
41
8
12
37
1.73
1050308--1050357
19
2.6
19
96
0
91
22
28
18
32
1.97
1050933--1050958
13
2.0
13
100
0
52
69
0
30
0
0.89

Tables:   1   2   3   4   5

The End!