genome.fa.s8661.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008661.1 Hibiscus syriacus cultivar Beakdansim tig00111659_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1762280

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 822 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520084--520122	21	1.9	21	89	5	62	43	5	0	51	1.24
520147--520197	21	2.3	21	86	6	66	70	3	3	21	1.20
522799--522876	14	5.3	15	72	14	56	28	15	8	47	1.75
522797--522876	29	2.7	29	79	11	92	27	16	8	47	1.76
524273--524297	2	12.5	2	100	0	50	48	0	52	0	1.00
526829--527095	135	2.0	136	99	0	527	25	21	25	27	1.99
528638--528714	20	3.9	19	78	13	84	31	22	23	23	1.99
528882--528936	22	2.5	22	87	0	83	23	40	16	20	1.91
529316--529360	19	2.4	19	92	7	74	11	17	24	46	1.81
529367--529433	20	3.3	20	87	0	80	16	13	23	46	1.82
529386--529436	20	2.5	20	93	0	84	11	9	23	54	1.66
531159--531208	18	2.8	18	93	0	91	34	20	6	40	1.77
531357--531403	20	2.3	20	92	0	76	34	27	21	17	1.95
531446--531501	21	2.7	21	88	2	78	21	19	23	35	1.96
531462--531502	21	2.0	21	100	0	82	14	19	24	41	1.89
531787--531862	21	3.6	21	70	0	71	26	31	19	22	1.98
531789--531871	42	2.0	42	85	4	114	24	36	18	21	1.95
533277--533338	14	4.3	14	73	6	52	38	1	14	45	1.55
533452--533490	20	2.0	20	94	0	69	48	23	20	7	1.75
533484--533763	20	14.6	20	78	10	291	25	19	22	32	1.97
534059--534093	18	1.9	18	94	0	61	17	2	25	54	1.57
536128--536154	14	1.9	14	100	0	54	7	18	29	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536129--536161	14	2.5	13	90	9	50	6	21	24	48	1.72
536354--536407	24	2.2	24	93	0	90	40	20	18	20	1.91
537228--537349	20	6.0	20	81	5	129	31	19	21	27	1.97
538521--538639	60	2.0	60	81	4	143	37	16	17	27	1.92
552203--552339	55	2.5	55	89	3	213	30	21	21	25	1.99
558001--558045	19	2.4	19	88	3	65	24	26	13	35	1.92
562764--562794	16	2.0	16	93	6	55	64	6	0	29	1.18
563234--563286	21	2.5	20	74	17	54	26	3	18	50	1.64
567133--567186	21	2.6	21	90	0	81	31	27	20	20	1.97
567174--567222	20	2.5	20	89	0	71	40	12	18	28	1.86
567246--567303	7	8.3	7	96	0	80	44	34	0	20	1.52
567249--567304	21	2.7	21	91	0	94	42	33	0	23	1.54
567384--567433	14	3.7	14	84	7	68	50	32	0	18	1.47
567362--567401	21	1.9	21	100	0	80	50	32	0	17	1.47
567384--567436	27	1.9	28	84	3	72	49	32	0	18	1.48
568095--568224	66	2.0	64	94	5	226	40	12	6	41	1.67
569342--569373	11	2.9	11	95	0	55	25	3	28	43	1.69
572354--572405	13	4.0	13	84	0	59	28	19	17	34	1.94
573613--573643	12	2.6	12	94	0	53	70	9	6	12	1.31
580109--580140	15	2.1	15	94	0	55	37	9	6	46	1.61
582396--582438	19	2.2	19	83	8	50	39	6	9	44	1.64
596711--596793	30	2.7	32	86	3	116	32	21	13	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598461--598518	31	1.9	30	85	3	80	46	8	10	34	1.69
600394--600482	43	2.1	43	80	2	99	49	7	15	26	1.72
600774--600926	50	3.0	51	95	1	272	45	18	1	34	1.61
602572--602615	20	2.3	19	85	11	63	20	25	9	45	1.80
602578--602615	20	1.9	20	94	0	67	21	23	10	44	1.83
602721--602765	17	2.6	16	83	13	54	42	0	0	57	0.98
604428--604460	7	4.6	7	96	3	57	45	0	54	0	0.99
605949--606068	4	28.0	4	71	12	69	30	3	4	61	1.31
605954--606071	18	7.1	17	69	21	72	31	3	4	61	1.32
605945--606068	26	4.7	25	70	17	90	31	3	4	61	1.30
606034--606076	22	2.0	22	90	0	68	34	2	2	60	1.22
609818--609858	15	2.8	15	82	13	50	26	0	0	73	0.84
609820--609859	19	2.2	18	86	4	53	25	0	0	75	0.81
609919--610000	33	2.5	34	88	6	123	37	17	13	31	1.88
614524--614618	32	2.9	33	81	4	104	31	10	16	41	1.83
615834--615942	37	3.0	37	91	2	184	28	22	11	36	1.90
615832--615940	36	3.0	36	91	1	182	27	22	11	37	1.90
616073--616137	31	2.1	31	85	0	85	47	16	7	27	1.74
616144--616401	83	3.1	82	87	2	349	31	27	18	22	1.97
616750--616800	3	17.7	3	84	15	72	31	0	0	68	0.90
616854--616919	33	2.0	33	93	0	114	40	19	10	28	1.85
616854--616935	33	2.5	33	88	4	103	37	19	13	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617436--617464	12	2.3	13	94	5	51	27	0	3	68	1.05
621376--621433	15	4.0	14	77	20	57	41	0	8	50	1.33
623116--623161	18	2.8	16	86	6	65	36	6	28	28	1.82
623888--623960	38	1.9	38	94	2	130	38	36	12	12	1.81
624190--624215	5	5.2	5	100	0	52	23	57	19	0	1.40
634017--634062	17	2.6	18	80	13	51	63	4	8	23	1.42
635984--636056	32	2.3	32	82	0	101	17	30	28	23	1.97
644225--644271	24	2.0	24	86	0	67	51	0	2	46	1.13
644644--644704	24	2.5	25	84	12	83	16	9	8	65	1.45
651746--651803	2	29.0	2	100	0	116	50	0	0	50	1.00
651991--652049	29	2.0	29	93	0	100	23	11	15	49	1.77
656669--656727	29	2.0	29	100	0	118	23	13	13	49	1.78
668550--668716	65	2.6	65	79	8	164	32	20	16	30	1.95
668635--668758	64	1.9	64	82	14	157	32	23	16	28	1.96
669224--669259	17	2.1	17	100	0	72	22	5	38	33	1.77
674377--674448	30	2.4	30	86	2	92	33	27	19	19	1.96
674434--674506	31	2.4	31	88	0	110	32	24	20	21	1.97
674434--674529	31	3.1	31	82	5	88	35	21	20	21	1.96
675554--675596	21	2.0	21	86	8	61	34	18	23	23	1.96
676053--676082	14	2.1	15	93	6	53	70	0	23	6	1.11
678537--678608	30	2.4	30	83	2	83	33	29	19	18	1.95
678594--678666	31	2.4	31	97	0	137	31	27	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678594--678689	31	3.1	31	89	3	122	33	23	20	21	1.97
685139--685166	14	2.0	14	100	0	56	64	0	28	7	1.20
690990--691029	18	2.2	18	100	0	80	27	30	10	32	1.89
691684--691757	29	2.5	30	89	8	116	54	1	6	37	1.36
692838--692907	31	2.3	31	85	5	88	44	12	7	35	1.70
695345--695410	24	2.8	24	86	2	80	51	16	15	16	1.77
695357--695438	12	6.9	12	71	18	64	46	19	15	18	1.84
697871--697903	15	2.2	16	89	10	52	30	27	27	15	1.96
697921--697955	13	2.7	13	90	0	52	17	20	48	14	1.81
697890--697943	18	3.0	18	88	0	81	16	22	44	16	1.86
698922--698999	31	2.5	31	82	0	93	32	11	16	39	1.85
700161--700244	38	2.2	39	89	6	136	11	10	38	39	1.77
699939--700455	249	2.1	244	88	7	774	23	11	28	36	1.90
701035--701079	18	2.6	18	82	6	58	28	24	6	40	1.80
704910--705063	73	2.1	73	98	0	299	44	12	18	24	1.85
705036--705082	21	2.2	21	80	0	58	42	12	14	29	1.83
712081--712113	2	16.5	2	100	0	66	51	0	0	48	1.00
712209--712460	128	2.0	128	95	0	452	34	19	10	35	1.86
713606--713648	17	2.6	17	79	17	54	48	2	0	48	1.14
713688--713735	23	2.1	23	84	7	62	52	0	2	45	1.12
715113--715236	64	1.9	64	85	3	169	30	16	20	32	1.95
715222--715274	19	2.8	19	100	0	106	30	16	30	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
715114--715256	64	2.2	64	81	4	164	31	16	22	30	1.95
715178--715339	83	1.9	83	82	8	204	30	16	23	29	1.96
721681--721730	21	2.4	21	93	0	91	30	14	10	46	1.77
721675--721730	21	2.7	20	88	2	76	30	12	8	48	1.72
721851--721890	21	1.9	21	89	0	62	30	7	7	55	1.56
723833--723936	45	2.3	45	94	0	181	30	15	24	29	1.95
742189--742305	34	3.3	36	85	9	159	34	3	17	44	1.66
747771--747834	20	3.4	20	66	29	59	31	3	18	46	1.65
747764--747884	35	3.4	36	85	6	165	33	4	18	44	1.68
756807--756845	21	1.9	20	89	5	60	10	5	10	74	1.21

Tables:   1   2   3   4   5   6   7