genome.fa.s8661.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008661.1 Hibiscus syriacus cultivar Beakdansim tig00111659_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1762280

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 822 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1530429--1530500	30	2.4	30	86	4	101	34	23	16	25	1.95
1536217--1536297	31	2.6	31	98	0	153	22	14	16	46	1.83
1536308--1536344	16	2.3	16	95	0	65	56	27	13	2	1.50
1536304--1536360	24	2.3	25	90	6	89	57	24	12	5	1.55
1537449--1537479	14	2.2	14	94	0	53	54	25	12	6	1.62
1541137--1541477	83	4.1	83	88	1	463	26	21	21	30	1.99
1541476--1541945	83	5.7	84	84	4	483	26	19	21	32	1.97
1541496--1541927	166	2.6	166	84	3	536	26	20	21	31	1.98
1541969--1542123	80	1.9	79	89	1	238	26	20	23	30	1.98
1541121--1542229	474	2.3	474	90	0	1718	26	20	22	31	1.98
1541969--1542248	83	3.4	79	80	6	247	25	20	23	31	1.98
1542499--1542618	43	2.8	43	87	0	177	21	17	29	31	1.96
1543862--1543888	2	13.5	2	100	0	54	48	0	0	51	1.00
1547918--1547945	12	2.3	12	100	0	56	60	0	0	39	0.97
1555331--1555373	18	2.4	18	92	0	68	20	23	13	41	1.88
1556236--1556266	16	1.9	16	100	0	62	45	16	12	25	1.83
1557862--1557925	19	3.4	19	78	6	76	26	29	0	43	1.55
1558131--1558265	2	68.5	2	75	11	127	48	5	0	45	1.30
1558123--1558158	18	2.1	18	94	5	65	50	0	5	44	1.25
1567856--1567883	2	14.0	2	100	0	56	50	0	0	50	1.00
1573471--1573521	25	2.0	25	96	0	93	39	15	21	23	1.92
1579870--1579919	19	2.6	19	96	0	91	34	30	14	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1587729--1587776	25	1.9	25	82	0	60	37	22	10	29	1.88
1601003--1601027	13	1.9	13	100	0	50	24	20	16	40	1.91
1610853--1610884	3	10.7	3	93	0	55	65	0	3	31	1.08
1612324--1612394	3	23.3	3	76	18	58	64	0	1	33	1.02
1612308--1612394	26	3.2	26	80	12	88	63	0	1	35	1.02
1612354--1612394	7	5.9	7	81	18	50	70	0	0	29	0.87
1612353--1612393	16	2.6	16	88	3	66	70	0	0	29	0.87
1612536--1612590	17	3.1	17	68	31	51	21	21	7	49	1.74
1612536--1612591	20	3.0	20	74	25	59	23	21	7	48	1.74
1612738--1613069	113	2.9	113	92	0	540	27	20	15	36	1.93
1614805--1614981	75	2.4	75	77	3	178	29	24	12	33	1.92
1618237--1618266	8	3.8	8	90	0	51	0	23	0	76	0.78
1620393--1620450	19	3.1	19	97	0	107	20	39	15	24	1.91
1626339--1626419	24	3.6	22	74	14	76	23	24	22	29	1.99
1628957--1628996	21	1.9	21	94	0	71	32	30	15	22	1.94
1629022--1629060	19	2.1	19	95	0	69	20	38	15	25	1.92
1628957--1629186	64	3.5	64	79	10	204	31	26	15	26	1.96
1629138--1629186	19	2.6	19	84	9	57	24	30	18	26	1.98
1631311--1631393	43	1.9	44	82	2	105	36	20	10	32	1.87
1632706--1632745	2	20.0	2	100	0	80	50	0	0	50	1.00
1633620--1633655	2	18.0	2	100	0	72	50	0	0	50	1.00
1633689--1633731	14	2.9	15	82	6	61	76	4	0	18	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1634248--1634329	37	2.2	37	95	0	146	13	35	6	45	1.68
1635147--1635218	3	24.3	3	76	18	62	65	0	1	33	1.02
1635130--1635198	29	2.3	29	85	7	95	62	0	1	36	1.04
1635179--1635214	14	2.8	13	88	12	56	72	0	0	27	0.85
1635179--1635217	16	2.7	14	88	11	53	71	0	0	28	0.86
1641575--1641616	20	2.1	20	91	8	68	16	16	42	23	1.88
1644034--1644175	32	4.5	32	79	4	135	35	16	13	35	1.87
1648840--1648877	20	1.9	20	94	0	67	44	13	23	18	1.85
1648840--1648883	20	2.3	19	88	7	63	45	11	25	18	1.82
1657556--1657602	6	7.8	6	81	9	51	55	0	0	44	0.99
1661876--1661900	7	3.6	7	100	0	50	64	0	0	36	0.94
1662403--1662447	21	2.2	21	84	4	56	40	17	24	17	1.91
1662437--1662529	20	4.7	20	93	0	150	26	27	20	24	1.99
1663264--1663309	24	1.9	24	90	0	74	26	19	21	32	1.97
1663263--1663316	24	2.2	24	83	0	72	24	16	20	38	1.92
1663998--1664233	117	2.0	118	96	2	440	28	20	24	26	1.99
1664326--1664350	12	2.1	12	100	0	50	72	0	28	0	0.86
1666521--1666651	19	7.7	19	67	23	103	42	19	23	13	1.87
1666521--1666647	33	3.8	33	90	4	211	42	19	23	14	1.88
1666522--1666654	66	2.0	66	98	0	257	41	19	23	15	1.90
1666647--1666708	19	3.3	19	88	0	70	16	19	19	45	1.86
1666815--1666848	14	2.4	14	95	0	59	44	23	0	32	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1669537--1669592	14	3.6	14	74	21	58	39	25	25	10	1.87
1669513--1669611	33	3.0	33	96	1	180	39	24	25	11	1.88
1669488--1669666	19	10.1	18	71	21	130	42	21	24	12	1.87
1669550--1669666	52	2.2	52	92	0	189	41	23	23	11	1.87
1669662--1669732	19	3.7	19	86	1	97	11	15	23	49	1.77
1670224--1670275	20	2.6	20	93	0	95	28	17	23	30	1.97
1670262--1670478	20	10.6	21	73	10	137	27	18	19	34	1.95
1670262--1670355	41	2.3	40	85	8	120	22	20	19	38	1.94
1670330--1670493	41	4.0	40	68	7	123	31	17	20	31	1.96
1670468--1670520	21	2.5	22	81	6	74	35	18	24	20	1.95
1670307--1670561	123	2.1	123	79	7	270	30	17	21	29	1.97
1678871--1678937	24	2.8	24	90	0	107	22	28	25	23	1.99
1686617--1686655	17	2.3	17	86	0	51	48	2	10	38	1.51
1686793--1686852	6	10.0	6	92	0	102	20	0	0	80	0.72
1690197--1690235	19	2.1	18	85	4	51	28	10	12	48	1.74
1691032--1691066	17	2.1	17	89	10	54	42	8	0	48	1.33
1690887--1691364	238	2.0	243	85	4	657	46	7	5	40	1.56
1691259--1691292	17	1.9	18	88	5	52	44	2	0	52	1.16
1692041--1692083	22	1.9	22	85	4	59	51	2	2	44	1.27
1693655--1693719	35	1.9	33	81	9	78	27	26	16	29	1.97
1694182--1694220	20	2.0	20	89	0	60	30	17	28	23	1.97
1694391--1694448	18	3.0	19	80	14	82	50	5	10	34	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1695963--1696018	20	2.8	20	91	0	94	10	8	48	32	1.69
1701090--1701122	17	1.9	17	93	0	57	66	0	0	33	0.92
1702654--1702705	13	3.8	13	85	9	77	51	0	36	11	1.38
1707787--1707841	21	2.6	21	82	2	65	58	1	1	38	1.20
1712381--1712420	21	1.9	21	84	0	53	42	7	15	35	1.75
1747140--1747276	60	2.3	60	81	0	175	37	13	13	34	1.85
1748662--1748686	9	2.8	9	100	0	50	24	0	0	76	0.80
1753813--1753863	25	2.0	26	88	3	77	27	15	21	35	1.94
1754044--1754256	116	1.8	115	87	5	313	29	1	13	55	1.47
1756572--1756644	27	2.7	27	89	0	119	42	15	2	39	1.61
1759536--1759594	31	1.9	31	96	3	111	50	3	3	42	1.35
1759536--1759594	30	2.0	29	93	6	100	50	3	3	42	1.35
1760036--1760087	25	2.3	21	79	20	61	30	5	3	59	1.39
1760724--1760829	38	2.8	38	68	7	88	18	21	28	31	1.97

Tables:   1   2   3   4   5   6   7

The End!