genome.fa.s8661.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008661.1 Hibiscus syriacus cultivar Beakdansim tig00111659_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1762280

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 822 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1294573--1294650	41	1.9	41	94	0	138	44	16	24	14	1.84
1294574--1294649	21	3.7	21	82	3	100	46	17	23	13	1.83
1294629--1294692	33	2.0	32	90	9	103	43	21	21	12	1.86
1294629--1294676	19	2.8	19	76	23	61	43	20	20	14	1.87
1294632--1294705	32	2.3	32	86	6	96	45	24	18	10	1.81
1294723--1294811	14	5.7	14	73	21	79	8	24	22	43	1.82
1294706--1294819	33	3.5	33	96	2	212	10	22	20	46	1.81
1296445--1296909	185	2.5	184	96	2	855	22	13	18	45	1.84
1296445--1296909	93	5.1	93	96	2	859	22	13	18	45	1.84
1296957--1297085	19	7.3	19	75	17	125	46	28	16	8	1.76
1296993--1297085	33	2.8	32	91	4	150	47	27	17	7	1.74
1296957--1297085	52	2.5	52	72	14	131	46	28	16	8	1.76
1297081--1297198	19	6.8	18	73	18	99	8	18	25	47	1.77
1297103--1297158	14	3.7	14	76	17	58	7	19	28	44	1.77
1297086--1297177	32	2.8	33	88	3	141	8	18	25	47	1.77
1299128--1299163	14	2.6	14	95	0	63	33	0	22	44	1.53
1299270--1299313	19	2.4	19	96	3	81	45	18	20	15	1.85
1299339--1299594	33	7.5	33	71	18	211	12	23	17	46	1.83
1299361--1299594	19	13.4	19	78	17	258	12	22	17	46	1.82
1299566--1299613	19	2.5	20	86	3	62	12	18	25	43	1.85
1299339--1299594	52	4.9	52	97	0	478	12	23	17	46	1.83
1301864--1301888	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1302787--1303016	20	11.5	20	84	1	219	20	17	24	37	1.94
1305600--1305638	14	2.8	13	88	7	51	30	7	15	46	1.74
1308914--1308983	34	2.1	32	86	5	95	22	28	15	32	1.95
1309252--1309293	21	2.0	22	90	4	68	23	23	26	26	2.00
1309349--1309401	20	2.7	20	90	0	79	28	20	30	20	1.98
1309421--1309496	20	3.8	20	87	1	89	21	19	32	26	1.97
1309718--1309757	21	1.9	21	84	0	53	50	10	10	30	1.69
1310905--1310952	19	2.5	20	82	3	62	29	12	6	52	1.63
1312298--1312374	20	3.7	20	77	17	75	22	19	36	22	1.95
1312298--1312397	21	4.7	21	77	10	96	22	18	36	24	1.95
1313861--1314022	60	2.7	61	76	14	165	30	20	5	43	1.75
1314155--1314338	60	3.1	60	80	3	210	42	4	19	33	1.71
1317531--1321344	4	963.0	4	97	1	7326	24	25	0	49	1.51
1322716--1322792	37	2.1	38	87	4	113	46	2	1	49	1.23
1326460--1326601	66	2.1	66	81	7	160	34	9	15	40	1.80
1326492--1326626	66	2.0	67	91	1	218	30	11	18	40	1.85
1327762--1327793	16	1.9	17	93	6	57	31	0	28	40	1.57
1344569--1344605	18	2.1	18	94	0	65	18	32	16	32	1.93
1346283--1346329	24	1.9	24	83	12	60	10	4	4	80	0.98
1352465--1352499	16	2.2	16	100	0	70	25	22	17	34	1.96
1353311--1353349	19	2.2	19	86	9	55	23	17	7	51	1.71
1356564--1356605	21	2.0	21	81	9	50	47	2	11	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1357369--1357402	15	2.2	16	94	5	61	50	5	20	23	1.70
1359516--1359587	30	2.4	32	78	19	84	76	1	12	9	1.08
1359545--1359626	14	6.2	13	69	17	53	74	1	17	7	1.11
1359520--1359619	17	5.6	17	77	20	73	75	1	15	9	1.10
1359575--1359629	7	7.9	7	80	13	60	74	0	21	3	0.97
1360607--1360691	43	2.0	43	88	4	127	35	14	17	32	1.90
1362018--1367244	4	1342.5	4	90	7	8371	48	25	1	25	1.58
1367477--1367567	42	2.2	40	80	7	103	28	21	16	32	1.95
1367248--1368195	483	2.0	483	84	3	1255	33	15	15	35	1.89
1403852--1403910	8	7.1	8	79	7	64	35	47	15	1	1.55
1403853--1403881	6	4.8	6	100	0	58	34	51	13	0	1.42
1403852--1403907	12	4.8	12	76	8	53	35	48	14	1	1.54
1404332--1404415	42	2.0	42	97	0	159	41	13	11	33	1.80
1406237--1406282	16	2.8	17	90	6	76	63	4	0	32	1.14
1406239--1406278	16	2.5	16	100	0	80	67	5	0	27	1.11
1407106--1407178	37	1.9	38	86	5	103	26	15	21	36	1.93
1407099--1407178	20	4.2	20	82	6	103	26	16	21	36	1.94
1408056--1408139	3	27.7	3	78	7	80	34	3	1	60	1.21
1408935--1409010	23	3.3	23	98	0	143	30	25	22	22	1.99
1409693--1409744	21	2.5	21	96	0	95	28	26	13	30	1.94
1410783--1410830	23	2.1	23	84	0	60	37	12	16	33	1.86
1411215--1411266	23	2.3	22	90	6	77	44	19	1	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1411611--1411695	37	2.2	38	91	4	136	16	14	21	48	1.81
1411951--1411987	18	2.1	18	89	0	56	51	10	5	32	1.60
1412235--1412285	25	2.0	25	92	0	84	39	19	7	33	1.81
1412548--1412599	23	2.3	22	90	6	77	44	19	1	34	1.62
1412558--1412620	23	2.7	23	90	0	90	38	19	6	36	1.77
1412973--1413044	23	3.2	23	78	4	74	38	20	5	34	1.76
1413408--1413470	23	2.7	23	90	0	90	38	19	6	36	1.77
1412320--1413569	425	2.9	426	95	2	2266	39	12	8	39	1.73
1416038--1416537	184	2.7	184	96	0	894	32	16	15	35	1.90
1418017--1418101	3	28.0	3	77	2	80	24	34	5	35	1.80
1418024--1418113	42	2.1	42	91	0	144	22	34	7	35	1.83
1418067--1418113	12	3.9	12	88	0	58	21	34	8	36	1.84
1418049--1418116	21	3.4	18	69	21	55	19	35	8	36	1.83
1419564--1421236	196	8.5	197	96	2	3033	32	16	15	35	1.91
1419564--1421236	786	2.1	783	95	3	3039	32	16	15	35	1.91
1421384--1421431	18	2.6	19	86	6	71	56	10	2	31	1.45
1425566--1425610	20	2.3	18	82	17	63	20	17	11	51	1.75
1425835--1426283	229	2.0	228	95	0	808	39	7	8	44	1.62
1428176--1428215	21	2.0	20	85	5	53	47	10	2	40	1.50
1429513--1429558	19	2.4	18	89	7	65	28	26	19	26	1.99
1430297--1430351	2	28.5	2	78	7	60	50	0	0	49	1.00
1430412--1430437	12	2.2	12	100	0	52	11	15	46	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1430845--1430890	23	2.0	23	86	0	65	17	17	26	39	1.91
1431448--1431501	23	2.3	23	96	0	99	31	27	20	20	1.97
1431499--1431538	20	2.0	21	85	5	55	32	22	15	30	1.94
1439104--1439244	34	3.6	41	77	20	142	51	17	3	27	1.62
1439150--1439240	43	2.1	42	86	9	123	50	18	3	27	1.62
1441527--1441570	22	2.0	23	90	4	72	25	0	4	70	1.06
1442846--1442874	12	2.3	13	94	5	51	20	6	3	68	1.27
1449369--1450055	115	6.0	115	94	0	1180	33	15	19	30	1.93
1451182--1451350	74	2.3	74	84	3	205	30	14	24	30	1.94
1452581--1452635	22	2.5	22	87	0	92	36	10	12	40	1.79
1453309--1453490	76	2.4	76	86	1	258	26	19	20	33	1.97
1453521--1454383	113	7.7	111	81	10	940	37	13	18	30	1.90
1453506--1454383	225	3.9	222	87	7	1136	37	14	18	30	1.90
1454171--1454501	124	2.7	123	83	5	399	39	14	18	27	1.90
1454730--1454766	3	13.0	3	88	5	51	32	0	0	67	0.91
1459671--1459828	77	2.0	78	86	3	221	28	13	12	45	1.80
1461730--1461788	16	3.7	16	90	0	100	8	13	22	55	1.64
1465914--1465954	20	2.0	20	85	0	55	46	2	2	48	1.28
1480598--1480714	18	6.5	18	87	2	164	20	20	32	26	1.97
1480879--1480917	14	2.9	13	88	7	60	35	0	23	41	1.55
1482425--1482582	65	2.4	65	87	6	214	28	18	22	31	1.97
1483077--1483111	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1484750--1484788	13	3.1	13	88	3	53	48	2	7	41	1.45
1485502--1485548	23	2.0	25	83	8	62	44	12	4	38	1.62
1491186--1491346	65	2.5	65	83	5	202	27	19	22	29	1.98
1491187--1491388	65	3.1	63	78	10	187	27	18	23	30	1.98
1494957--1495071	18	6.4	18	89	0	176	18	22	30	28	1.97
1499915--1500255	171	2.0	169	93	6	584	37	22	9	30	1.86
1505704--1506025	165	1.9	167	97	2	614	24	17	15	42	1.88
1511525--1511579	27	2.0	27	100	0	110	27	21	25	25	2.00
1530204--1530234	16	1.9	16	93	0	53	45	0	0	54	0.99
1530438--1530500	15	4.2	15	89	0	99	34	25	14	25	1.94

Tables:   1   2   3   4   5   6   7