genome.fa.s8662.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008662.1 Hibiscus syriacus cultivar Beakdansim tig00111662_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1703488

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 848 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8336--8472	60	2.3	60	81	0	175	37	13	13	34	1.85
9874--9898	9	2.8	9	100	0	50	24	0	0	76	0.80
10653--10710	16	3.3	18	72	18	52	31	8	1	58	1.38
15064--15114	25	2.0	26	88	3	77	27	15	21	35	1.94
17847--17919	27	2.7	27	89	0	119	42	15	2	39	1.61
20849--20911	33	1.9	33	100	0	126	49	3	3	44	1.34
21362--21415	25	2.4	22	80	17	65	29	5	3	61	1.36
23666--23837	40	4.2	41	75	6	127	34	18	17	29	1.94
25987--26217	55	4.2	55	90	2	340	35	9	19	35	1.84
40773--40916	46	3.2	46	62	26	115	29	20	25	25	1.99
40771--40952	91	2.0	91	98	0	355	32	19	26	21	1.97
41364--41524	56	2.9	56	89	4	229	37	9	19	33	1.85
44251--44275	11	2.3	11	100	0	50	80	0	20	0	0.72
47921--48065	33	4.4	32	74	11	123	15	7	31	45	1.74
47901--48035	65	2.1	65	84	2	173	20	6	25	48	1.73
50531--50569	19	2.1	19	90	0	60	35	28	12	23	1.91
50653--50726	20	3.7	20	82	10	105	31	28	18	21	1.97
50651--50748	41	2.4	41	94	0	178	35	25	17	21	1.95
50652--50747	20	4.7	21	77	12	92	35	26	17	20	1.95
51292--51396	20	5.6	19	70	16	67	20	18	20	40	1.92
52254--52300	20	2.3	20	96	0	85	23	21	29	25	1.99
54082--54126	16	2.8	17	80	10	58	48	4	2	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54082--54140	16	3.7	16	79	4	57	50	3	1	44	1.28
54103--54157	21	2.7	20	73	13	58	47	1	0	50	1.11
54123--54202	25	3.2	25	76	15	67	50	3	1	45	1.28
55375--55440	20	3.3	20	76	14	73	43	21	15	19	1.87
55638--55676	16	2.5	15	84	8	51	30	2	0	66	1.05
56229--56262	12	2.8	12	90	0	50	55	29	0	14	1.40
56388--56441	24	2.2	24	83	0	63	22	16	22	38	1.93
56616--56649	3	11.3	3	90	0	50	67	0	29	2	1.05
59080--59136	20	2.8	20	89	0	78	15	14	29	40	1.87
59599--59635	18	2.1	18	89	0	56	29	5	16	48	1.68
59949--60035	39	2.2	39	87	0	129	47	20	13	18	1.83
60396--60472	28	2.8	28	82	2	102	48	19	0	32	1.49
60413--60463	14	3.6	14	100	0	102	47	21	0	31	1.51
61171--61295	31	4.0	31	90	2	189	36	22	19	21	1.95
65120--65153	17	2.0	18	88	11	54	58	17	2	20	1.51
65387--65511	31	4.0	31	94	2	207	37	23	19	20	1.94
66448--66493	21	2.2	21	84	0	56	13	26	30	30	1.93
67535--67581	24	2.0	24	86	0	67	38	4	8	48	1.53
67883--67969	39	2.2	39	93	0	147	48	21	13	16	1.80
68260--68401	66	2.3	63	87	7	200	50	17	0	30	1.51
69760--69837	21	3.7	21	81	6	86	24	20	32	23	1.98
71854--71907	20	2.7	19	80	8	63	48	20	16	14	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72403--72582	20	9.1	20	73	8	145	20	14	23	41	1.89
72403--72582	40	4.5	40	84	8	226	20	14	23	41	1.89
72403--72627	119	1.9	119	83	5	294	21	13	24	40	1.89
73477--73526	19	2.6	19	93	0	82	48	2	2	48	1.24
73543--73593	26	2.0	26	88	0	75	43	9	3	43	1.56
77856--78150	147	2.0	147	98	0	572	29	22	23	24	1.99
78847--78905	24	2.5	24	80	0	82	27	11	30	30	1.92
79471--79548	38	2.1	37	95	2	138	35	15	10	38	1.81
82356--82422	34	2.0	33	88	2	98	37	10	14	37	1.81
86236--86338	3	34.7	3	90	1	163	33	0	0	65	1.00
86815--86867	26	2.0	26	100	0	106	62	15	18	3	1.47
93489--93522	14	2.4	14	95	0	59	82	0	17	0	0.67
93493--93525	11	3.0	11	95	0	57	84	0	15	0	0.61
93489--93531	14	3.0	14	80	16	52	81	0	18	0	0.69
95761--96150	83	4.7	84	92	1	617	27	13	22	37	1.91
97263--97424	74	2.2	74	83	4	193	33	17	20	28	1.95
98713--98767	22	2.5	22	100	0	110	34	12	14	38	1.84
99236--100251	112	8.9	113	89	2	1396	37	14	19	28	1.91
99236--100251	225	4.5	226	88	3	1396	37	14	19	28	1.91
99236--100251	338	3.0	338	89	2	1473	37	14	19	28	1.91
100387--100484	3	33.7	3	84	10	132	33	1	0	65	1.00
100963--101015	26	2.0	26	100	0	106	62	15	18	3	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102733--102775	22	2.0	22	85	0	59	30	20	11	37	1.89
109053--109100	25	1.9	25	91	0	78	47	12	18	20	1.81
114434--114478	21	2.1	21	100	0	90	8	24	8	57	1.57
125168--125213	24	1.9	24	82	8	58	26	6	26	41	1.80
134795--134843	24	2.0	24	88	0	71	34	22	20	22	1.97
134990--135081	45	2.1	44	85	2	121	38	19	6	35	1.78
142694--142798	49	2.3	46	84	12	128	33	1	13	51	1.52
150830--150916	35	2.5	34	77	18	90	55	9	8	27	1.60
150907--150994	33	2.6	33	83	7	106	63	13	2	20	1.40
153260--153299	16	2.4	16	87	4	53	67	0	0	32	0.91
163524--163718	98	2.0	98	96	0	363	37	19	20	22	1.94
163818--163916	35	2.8	35	83	3	92	39	8	13	39	1.74
163850--163916	18	3.8	18	86	4	91	38	11	13	35	1.82
163818--163916	18	5.6	17	80	4	90	39	8	13	39	1.74
164118--164166	3	16.7	3	91	4	82	32	2	0	65	1.04
167946--168110	76	2.2	75	87	3	242	30	2	10	56	1.47
167974--168121	75	2.0	76	90	4	237	27	2	10	59	1.42
168144--168198	21	2.7	21	97	2	103	30	0	18	50	1.47
168060--168199	66	2.1	66	81	7	160	31	0	15	52	1.43
168780--168822	18	2.4	18	100	0	86	30	0	0	69	0.88
168852--168894	13	2.9	16	77	22	58	34	0	0	65	0.93
168877--168928	27	1.9	27	88	0	77	25	7	0	67	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174319--174352	1	34.0	1	87	0	50	5	0	0	94	0.32
174319--174353	10	3.6	10	92	7	63	8	0	0	91	0.42
176192--176353	73	2.2	75	86	7	233	30	2	10	56	1.46
176387--176441	21	2.7	21	97	2	103	30	0	18	50	1.47
176303--176442	66	2.1	66	80	7	151	31	0	15	53	1.42
178594--178842	125	2.0	124	97	2	473	35	15	20	28	1.93
180556--180604	15	3.3	15	83	11	55	26	8	20	44	1.79
180594--180650	29	2.0	29	100	0	114	29	14	14	42	1.84
185171--185332	40	4.1	40	96	0	288	24	17	25	32	1.97
185438--185529	45	2.0	47	89	4	143	38	7	19	34	1.80
189583--189609	14	1.9	14	100	0	54	29	7	14	48	1.71
194412--194835	55	7.9	55	85	4	396	29	25	16	28	1.97
194839--194910	38	1.9	37	94	2	126	20	19	18	41	1.90
196189--196225	16	2.2	17	95	4	67	5	18	0	75	0.99
196184--196233	15	3.3	15	86	8	66	8	16	0	76	1.02
197072--197133	31	2.0	31	100	0	124	35	32	6	25	1.82
211521--211561	16	2.5	16	88	4	55	29	2	0	68	1.03
215880--215941	31	2.2	28	76	20	74	56	9	11	22	1.63
215888--215946	31	1.9	31	96	0	109	55	11	11	20	1.67
217592--217624	14	2.3	15	90	10	52	42	0	3	54	1.15
217993--218049	25	2.2	26	78	6	62	36	0	5	57	1.21
218781--218861	30	2.7	31	75	12	89	45	2	17	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
232065--232104	20	2.0	21	95	5	73	32	10	30	27	1.89
236616--236654	16	2.4	17	83	12	55	61	0	2	35	1.10
236684--236729	16	2.8	16	86	6	56	71	2	4	21	1.14
237472--237522	19	2.7	19	96	0	93	29	27	21	21	1.99
237550--237599	21	2.4	21	89	0	82	28	28	22	22	1.99
237621--237838	21	10.6	21	72	16	134	30	21	20	27	1.98
237621--237772	40	3.7	41	88	4	209	34	21	19	25	1.96
237621--237774	42	3.7	42	87	6	208	34	21	18	25	1.96
237714--237832	62	1.9	63	86	8	172	26	23	21	29	1.99
237802--237848	21	2.2	21	84	0	58	25	25	23	25	2.00

Tables:   1   2   3   4   5   6   7   8