genome.fa.s8662.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008662.1 Hibiscus syriacus cultivar Beakdansim tig00111662_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1703488

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 848 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238454--238486	5	6.6	5	100	0	66	0	21	57	21	1.41
238583--238887	21	14.8	21	70	19	169	26	20	21	30	1.98
238652--238928	41	6.8	41	92	2	434	25	21	20	32	1.97
238629--238948	21	15.5	21	71	17	152	25	21	21	31	1.98
239106--239253	76	2.0	75	90	4	235	58	10	2	29	1.45
241084--241112	15	1.9	15	100	0	58	82	0	6	10	0.83
241084--241118	16	2.3	15	90	5	52	82	2	5	8	0.91
247461--247610	75	2.0	76	88	3	223	60	11	2	26	1.42
247473--247637	77	2.2	75	87	4	233	56	10	1	30	1.44
250194--250298	41	2.6	41	76	7	106	25	22	20	31	1.98
253431--253503	29	2.5	30	95	2	130	24	19	31	24	1.98
253810--254119	43	7.2	42	82	4	334	25	24	18	32	1.97
256151--256228	36	2.2	36	100	0	156	37	11	11	39	1.78
264026--264101	38	2.0	39	92	2	127	31	10	13	44	1.77
264180--264238	26	2.3	27	80	14	70	47	1	6	44	1.39
264280--264317	2	20.0	2	84	10	53	47	0	2	50	1.15
264244--264297	28	2.0	26	86	10	74	48	0	1	50	1.11
264262--264317	12	5.0	11	77	10	60	48	0	1	50	1.11
265362--265573	116	1.8	117	81	9	265	46	8	8	36	1.64
265554--265605	18	2.9	18	78	15	54	61	1	7	28	1.34
265606--265653	23	2.1	23	84	0	60	50	2	0	47	1.12
266934--267014	3	26.7	3	83	12	103	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266946--267014	21	3.4	21	92	4	115	68	0	0	31	0.90
267153--267778	124	5.3	122	82	8	504	26	17	15	40	1.89
267518--267922	223	1.8	223	86	2	587	28	19	14	37	1.91
267362--267929	113	5.0	112	85	4	572	28	18	15	38	1.91
268619--268952	114	2.9	114	93	0	551	31	20	14	34	1.92
269633--269711	16	5.0	16	80	11	83	2	20	0	77	0.89
269632--269710	23	3.4	22	78	13	79	2	18	0	78	0.86
269633--269699	30	2.1	31	84	15	84	1	19	0	79	0.82
269632--269699	22	2.9	23	82	12	77	1	19	0	79	0.81
269630--269710	13	6.8	12	71	21	64	2	19	0	77	0.88
277022--277053	15	2.1	15	94	0	55	46	9	18	25	1.79
280518--280569	20	2.6	19	79	8	59	65	1	0	32	1.04
280427--280661	120	2.0	120	81	6	284	45	7	8	38	1.61
280698--280749	23	2.2	25	82	6	63	51	1	0	46	1.12
282118--282198	3	26.7	3	80	12	94	64	0	1	34	1.02
282130--282198	21	3.2	21	91	2	111	66	0	1	31	1.00
289979--290019	21	2.0	21	100	0	82	63	9	9	17	1.51
299851--299879	4	7.2	4	100	0	58	24	0	0	75	0.80
299728--300101	144	2.7	142	83	9	456	21	15	15	47	1.83
307045--307360	150	2.1	150	94	2	548	26	17	21	34	1.95
307328--307372	23	2.0	23	86	0	63	20	26	26	26	1.99
314008--314323	150	2.1	149	94	1	544	25	17	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314291--314335	23	2.0	23	86	0	63	20	26	26	26	1.99
316051--316082	16	2.0	16	93	0	55	53	6	6	34	1.51
327367--327413	22	2.1	22	100	0	94	36	31	12	19	1.89
328145--328193	21	2.3	21	96	0	89	36	8	16	38	1.78
334030--334056	14	1.9	14	100	0	54	37	0	0	62	0.95
343199--343236	19	2.0	19	89	0	58	31	0	13	55	1.38
343966--344018	21	2.5	22	81	3	63	24	1	0	73	0.93
348759--348796	19	2.0	19	89	0	58	31	0	13	55	1.38
348867--348893	12	2.2	12	100	0	54	48	0	0	51	1.00
348733--348946	76	2.8	76	87	4	274	29	0	12	57	1.39
349523--349563	11	3.6	11	93	3	64	21	0	0	78	0.76
359006--359057	9	5.7	9	75	11	52	21	3	1	73	1.10
359236--359547	163	1.9	163	86	4	450	34	10	13	40	1.80
367783--367823	18	2.3	18	82	0	55	53	4	17	24	1.63
370355--370407	25	2.0	27	85	14	74	33	18	20	26	1.96
371326--371374	18	2.6	19	81	15	57	30	14	24	30	1.94
374725--374762	20	1.9	20	88	0	58	36	0	0	63	0.95
376562--376600	18	2.2	18	90	0	60	30	28	12	28	1.93
378060--378102	18	2.4	18	80	0	50	32	27	11	27	1.92
381799--381854	14	4.1	13	76	17	51	57	1	0	41	1.09
383864--383897	17	2.0	17	100	0	68	52	0	5	41	1.25
389541--389593	2	26.5	2	100	0	106	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389906--389938	10	3.3	10	91	0	57	33	18	12	36	1.88
390431--390491	32	1.9	32	86	6	88	22	0	19	57	1.41
391409--391475	32	2.1	32	88	5	100	22	0	19	58	1.40
391449--391530	22	3.8	22	95	1	139	18	2	23	56	1.54
391445--391539	22	4.2	24	86	9	114	17	2	24	55	1.53
392583--392752	30	5.9	30	79	13	203	29	4	20	45	1.71
392625--392722	27	3.5	27	78	13	126	28	6	19	45	1.74
392595--392752	57	2.8	57	96	0	298	27	5	20	46	1.72
394040--394098	31	1.9	31	92	0	100	44	8	5	42	1.57
394987--395021	17	1.9	18	88	11	54	77	0	20	2	0.90
400538--400602	26	2.6	25	82	4	85	36	0	15	47	1.46
402409--402460	18	2.8	18	80	14	61	25	28	21	25	1.99
409150--409188	15	2.6	15	88	8	53	51	0	0	48	1.00
409152--409189	16	2.4	17	82	13	53	47	0	0	52	1.00
410087--410148	29	2.1	29	82	5	72	33	8	20	37	1.83
410094--410178	29	2.9	28	84	6	98	31	5	21	41	1.77
410008--410167	86	1.8	85	86	4	230	33	5	20	41	1.75
411276--411416	70	2.0	71	97	1	266	24	21	17	36	1.94
411541--411579	19	2.1	19	86	13	55	30	5	5	58	1.41
413930--414029	51	2.0	49	96	3	182	39	24	14	23	1.91
416895--416960	34	2.0	34	94	5	118	21	15	45	18	1.85
417143--417179	18	2.1	18	89	0	56	13	45	27	13	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417156--417188	13	2.5	13	95	0	57	18	42	24	15	1.88
417143--417202	31	2.0	30	86	3	84	16	41	25	16	1.89
417237--417386	58	2.6	58	79	2	149	30	4	22	43	1.72
417236--417386	29	5.2	29	73	6	108	29	4	22	43	1.73
420545--420602	28	2.1	28	100	0	116	20	22	36	20	1.95
447855--448286	216	2.0	214	96	0	801	27	19	26	26	1.99
455182--455279	8	11.8	8	81	11	60	79	1	11	8	0.98
455190--455266	8	9.1	9	86	10	78	81	1	6	10	0.91
457211--457464	90	2.8	90	90	2	388	25	16	22	35	1.95
457630--457699	34	2.1	34	89	5	106	27	15	15	41	1.88
457666--457843	66	2.7	65	79	8	189	29	21	14	35	1.92
458177--458647	44	10.9	44	66	9	207	28	22	20	28	1.98
458176--458765	129	4.6	128	86	4	799	29	21	19	28	1.98
471994--472063	30	2.3	30	85	4	97	35	14	5	44	1.69
475732--475886	43	3.6	44	90	2	233	32	24	10	31	1.90
481756--481796	17	2.3	19	83	8	50	56	19	4	19	1.60
482702--482749	14	3.3	14	76	5	51	64	27	6	2	1.28
483322--483356	2	17.5	2	100	0	70	48	0	0	51	1.00
493608--493745	68	2.0	70	95	2	253	31	15	15	36	1.89
495220--496102	442	2.0	439	95	1	1572	33	20	16	29	1.94
497814--497863	22	2.3	21	82	3	55	22	18	24	36	1.95
500313--500372	30	2.0	29	93	3	102	10	20	35	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500587--500741	53	2.9	54	92	2	244	20	28	21	29	1.98
501002--501080	21	3.8	21	69	12	63	31	24	17	26	1.97
501075--501258	93	2.0	93	90	2	289	27	19	18	34	1.95
501218--501310	42	2.2	42	94	0	159	31	21	21	25	1.98
507522--507557	6	6.0	6	86	0	54	50	16	16	16	1.79
520565--520620	2	28.0	2	100	0	112	50	0	0	50	1.00
520633--520709	38	2.0	38	100	0	154	31	15	10	42	1.81
523150--523217	30	2.3	30	84	0	82	42	10	42	4	1.58
523223--523268	24	1.9	24	86	0	65	19	21	39	19	1.93
527946--528019	36	2.1	36	84	0	94	52	13	6	27	1.65

Tables:   1   2   3   4   5   6   7   8