genome.fa.s8670.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008670.1 Hibiscus syriacus cultivar Beakdansim tig00111678_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  969061

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 515 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210922--210962	12	3.6	12	74	12	50	41	7	21	29	1.80
210925--210979	22	2.5	22	96	0	101	40	10	23	25	1.87
211976--212096	32	3.8	32	92	4	185	33	23	18	24	1.96
217144--217185	21	2.0	21	95	0	75	30	14	7	47	1.71
217180--217278	33	3.0	33	94	1	164	32	7	15	45	1.73
217264--217318	13	4.2	13	75	13	58	34	5	12	47	1.65
217516--217572	21	2.7	21	94	0	96	21	28	24	26	1.99
218126--218157	16	2.0	17	88	11	50	43	21	21	12	1.86
221133--221162	14	2.1	14	93	0	51	30	0	23	46	1.52
222588--222665	32	2.5	33	82	12	92	43	1	0	55	1.08
225811--225846	7	5.1	7	89	0	54	16	25	27	30	1.97
228520--228596	31	2.5	31	78	2	82	15	27	29	27	1.96
228905--228948	21	2.1	21	100	0	88	50	4	15	29	1.64
234018--234089	15	5.1	15	71	17	55	51	1	2	44	1.24
234017--234104	42	2.1	41	91	2	140	51	3	2	43	1.31
240692--241307	54	11.4	54	87	1	840	20	25	20	33	1.97
242235--242491	124	2.1	125	87	0	372	27	26	14	31	1.95
250239--250279	20	2.0	20	95	0	73	39	0	2	58	1.11
256199--256241	22	1.9	22	85	4	59	51	0	6	41	1.29
258079--258123	6	7.3	6	92	2	72	37	44	0	17	1.49
258388--258476	45	2.0	45	100	0	178	26	5	11	56	1.56
263623--263663	22	2.0	22	90	9	68	19	60	0	19	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272683--272712	14	2.1	14	93	0	51	50	6	0	43	1.28
272790--272826	7	5.3	7	86	0	56	18	0	35	45	1.50
272790--272830	21	2.0	20	95	4	73	19	0	34	46	1.50
273116--273148	17	1.9	17	88	11	50	57	18	12	12	1.64
274103--274128	2	13.0	2	100	0	52	50	0	0	50	1.00
277296--277351	27	2.1	26	83	3	67	32	12	48	7	1.68
280777--280808	12	2.7	12	95	0	55	28	0	6	65	1.16
287022--287064	22	2.0	22	81	9	52	39	0	4	55	1.20
288445--288484	21	2.0	20	86	13	57	47	0	12	40	1.41
290291--290349	3	19.7	3	83	13	77	64	0	0	35	0.94
290283--290356	9	8.6	8	75	19	53	64	0	1	33	1.02
290456--290494	11	3.5	11	86	10	53	58	0	0	41	0.98
301058--301094	2	18.5	2	100	0	74	48	0	51	0	1.00
302253--302288	2	18.5	2	94	5	65	52	0	0	47	1.00
305833--305904	19	3.8	19	77	0	72	19	16	13	50	1.79
307708--307751	12	3.6	12	81	3	52	27	20	2	50	1.60
307794--307850	19	3.0	19	81	0	69	28	19	8	43	1.80
313661--313685	13	1.9	13	100	0	50	80	0	4	16	0.87
315890--316257	51	7.0	51	82	7	384	24	24	17	33	1.96
315888--316257	105	3.5	105	80	8	378	24	24	17	34	1.96
315892--316224	157	2.1	157	92	1	551	22	24	18	34	1.96
315949--316238	156	1.9	154	93	2	472	22	24	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316231--316428	55	3.6	55	95	0	351	30	26	15	27	1.96
317425--317457	17	1.9	17	100	0	66	9	6	0	84	0.76
317417--317464	7	7.6	7	77	17	52	10	8	0	81	0.88
317417--317466	13	4.0	13	82	10	59	12	10	0	78	0.98
317416--317476	30	2.0	30	81	6	70	11	11	0	77	1.01
320938--320965	8	3.5	8	100	0	56	50	10	0	39	1.37
329114--329138	13	1.9	13	100	0	50	80	0	4	16	0.87
331936--331998	26	2.3	27	78	10	67	44	1	4	49	1.33
339824--339957	41	3.3	41	84	4	155	35	18	14	30	1.91
341416--341468	22	2.5	21	82	11	63	37	7	5	49	1.55
343646--343675	14	2.1	15	93	6	53	50	36	6	6	1.55
350470--350526	22	2.6	22	83	10	64	45	1	0	52	1.11
351131--351191	31	2.0	31	93	0	104	37	11	21	29	1.88
351131--351204	31	2.4	31	86	0	103	35	9	24	31	1.87
351330--351363	2	17.0	2	100	0	68	50	0	0	50	1.00
353540--353598	31	1.9	31	89	0	91	27	20	13	38	1.90
355785--355916	71	1.9	71	88	3	203	50	6	12	31	1.63
356055--356092	2	19.0	2	100	0	76	50	0	0	50	1.00
356594--356659	2	32.5	2	74	19	57	48	4	3	43	1.38
356599--356683	38	2.2	38	93	0	143	45	7	2	44	1.43
356599--356704	38	2.8	38	88	2	142	44	7	2	45	1.46
357289--357330	19	2.2	19	95	0	75	42	28	0	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362408--362441	16	2.1	16	100	0	68	41	32	0	26	1.56
383631--383813	52	3.4	52	82	5	231	51	14	7	26	1.68
383655--383815	26	6.0	26	70	13	76	52	14	7	24	1.67
386797--386844	24	2.0	24	91	0	78	27	6	18	47	1.72
388392--388514	30	4.1	30	86	2	158	61	8	11	17	1.54
390003--390054	9	5.6	9	80	15	52	63	1	0	34	1.06
389998--390076	38	2.2	37	82	8	101	67	1	1	30	1.07
390038--390076	21	1.9	21	89	5	62	74	0	0	25	0.82
390709--390926	66	3.4	64	75	10	202	42	14	15	27	1.85
391000--391062	32	2.0	32	83	0	81	33	26	11	28	1.91
392110--392196	28	3.1	27	76	18	79	0	13	11	74	1.07
392140--392183	22	2.0	23	87	12	67	0	13	11	75	1.06
392118--392195	13	6.2	13	71	12	56	0	14	10	75	1.04
394207--394249	13	3.2	13	78	18	52	53	11	18	16	1.72
396620--396770	30	5.0	30	85	0	149	57	9	15	16	1.64
396635--396779	60	2.4	60	83	0	182	58	9	13	17	1.62
403992--404097	43	2.5	43	89	6	178	36	9	16	37	1.81
406423--406470	21	2.3	20	79	10	51	37	6	2	54	1.38
409225--409264	2	20.0	2	94	0	71	47	0	52	0	1.00
410134--410181	24	2.0	25	87	4	71	52	2	8	37	1.44
410119--410147	3	9.7	3	100	0	58	65	0	0	34	0.93
410329--410623	137	2.2	136	79	6	330	30	16	24	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410517--410932	115	3.6	115	90	0	645	31	17	23	28	1.97
410516--410932	229	1.8	229	91	1	692	30	17	23	28	1.97
414514--414778	137	1.9	137	95	0	476	23	22	17	35	1.95
418949--418983	18	1.9	18	94	0	61	25	37	25	11	1.90
418949--419070	22	5.8	21	83	7	142	28	31	24	15	1.96
419603--419660	20	2.9	20	94	0	89	27	24	15	32	1.95
430317--430380	22	3.0	21	79	9	67	20	37	25	17	1.93
430362--430401	21	1.9	21	89	0	62	25	42	25	7	1.80
435461--435545	22	3.9	22	82	3	91	28	29	22	20	1.98
436076--436152	20	3.8	20	94	0	136	25	24	16	32	1.96
436549--436600	27	2.0	27	84	3	70	34	17	0	48	1.48
440427--440521	47	2.0	48	82	10	115	35	21	8	34	1.83
441741--441766	4	6.5	4	100	0	52	76	0	0	23	0.78
443591--443638	24	2.0	25	83	4	62	52	0	10	37	1.36
446860--446904	22	2.0	23	86	8	65	73	2	8	15	1.18
446898--446957	30	2.0	31	86	3	86	46	6	1	45	1.39
448563--448896	167	2.0	167	100	0	668	31	16	17	33	1.93
449016--449074	29	2.0	29	100	0	118	23	13	13	49	1.78
453656--453715	29	2.1	29	93	6	104	25	13	11	50	1.75
463584--463608	6	4.2	6	100	0	50	32	0	0	68	0.90
464160--464206	23	2.0	23	87	0	67	53	0	2	44	1.12
464374--464413	19	2.0	20	85	9	55	60	2	7	30	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464470--464502	12	2.8	12	90	9	50	60	0	6	33	1.21
465804--465892	3	28.7	3	89	10	135	67	0	0	32	0.91
465805--465892	16	5.8	16	89	10	141	68	0	0	31	0.90
466237--466979	110	6.7	110	87	6	1000	31	18	12	37	1.88
466238--466979	225	3.3	221	90	3	1136	31	18	12	37	1.88
467695--467918	114	2.0	114	89	1	342	29	20	15	34	1.93
468600--468666	13	5.1	13	86	13	93	0	17	0	82	0.68
468600--468678	40	2.0	41	90	7	126	1	18	0	79	0.80
468595--468677	13	6.2	13	80	16	73	1	18	0	80	0.77
480171--480203	12	2.8	12	90	9	50	60	0	6	33	1.21

Tables:   1   2   3   4   5