Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008670.1 Hibiscus syriacus cultivar Beakdansim tig00111678_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  969061

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 515 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
885385--885478
43
2.2
42
84
1
125
35
9
10
44
1.72
885542--885570
14
2.1
14
100
0
58
20
13
6
58
1.58
886596--886851
86
3.0
85
94
2
444
46
24
9
19
1.79
887779--887839
23
2.7
23
89
0
95
26
27
26
19
1.99
887855--888072
103
2.1
103
97
0
409
36
23
13
25
1.92
889251--889294
21
2.1
21
86
0
61
15
27
27
29
1.96
893066--893126
23
2.7
23
84
0
86
26
26
26
21
1.99
893142--893359
103
2.1
103
96
0
400
36
23
13
26
1.92
894539--894582
21
2.1
21
86
0
61
15
27
27
29
1.96
904830--904924
36
2.6
36
82
11
122
40
26
11
22
1.88
908893--908987
36
2.6
36
81
5
111
22
12
27
37
1.90
911665--911759
36
2.7
35
80
11
95
23
12
24
40
1.89
914438--914521
36
2.3
36
85
4
107
19
13
27
40
1.88
921506--921597
36
2.6
36
82
6
98
20
10
28
40
1.86
927066--927106
19
2.2
19
91
8
66
58
0
4
36
1.20
930004--930117
60
1.9
60
88
0
174
22
21
10
45
1.82
930936--931338
137
2.9
137
95
0
725
38
16
9
35
1.81
933388--933441
27
2.0
27
100
0
108
48
3
18
29
1.65
933419--933604
72
2.6
72
93
0
318
47
6
12
33
1.67
935642--935679
4
9.5
4
83
11
51
73
2
0
23
0.95
936173--936216
23
1.9
23
85
0
61
25
22
20
31
1.98
942496--942544
20
2.3
23
86
13
70
40
2
2
55
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
942515--942555
20
2.0
21
85
4
57
48
0
0
51
1.00
942536--942568
17
1.9
17
88
11
50
48
0
3
48
1.17
944644--944727
5
17.0
5
95
1
143
0
39
38
22
1.54
944726--944764
6
6.5
6
100
0
78
0
15
51
33
1.44
945036--945090
22
2.5
22
75
0
56
29
9
23
38
1.85
950613--950661
5
9.8
5
88
0
62
6
40
34
18
1.75
950659--950713
6
9.2
6
95
0
83
5
16
49
29
1.68
956562--956610
5
9.8
5
88
0
62
6
40
34
18
1.75
956608--956662
6
9.2
6
95
0
83
5
16
49
29
1.68
956935--956988
22
2.5
22
75
3
56
29
9
24
37
1.86
962489--962537
5
9.8
5
88
0
62
6
40
34
18
1.75
962535--962595
6
10.2
6
96
0
86
6
16
49
27
1.70
962865--962918
21
2.5
22
75
6
56
29
9
22
38
1.85

Tables:   1   2   3   4   5

The End!