genome.fa.s8676.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008676.1 Hibiscus syriacus cultivar Beakdansim tig00111693_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  957917

Tables:   1   2   3   4   

This is table  1  of  4  ( 379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8303--8331	6	4.8	6	100	0	58	17	0	0	82	0.66
8733--8774	15	2.9	14	82	6	57	26	7	4	61	1.42
11526--11562	18	2.1	18	85	14	51	32	13	10	43	1.79
13324--13368	20	2.2	20	84	0	54	35	0	4	60	1.17
13374--13409	17	2.2	17	90	5	56	55	0	5	38	1.23
13876--13922	20	2.3	21	75	17	53	29	0	25	44	1.54
14878--14903	8	3.2	8	100	0	52	15	0	11	73	1.11
15051--15092	2	21.0	2	100	0	84	50	0	0	50	1.00
22049--22086	17	2.2	17	90	0	58	63	7	0	28	1.23
24102--24155	24	2.2	24	83	0	63	27	9	14	48	1.75
24387--24633	70	3.5	70	84	6	304	57	15	7	19	1.61
24387--24642	140	1.8	140	86	3	372	57	16	7	19	1.63
27860--28325	159	3.0	155	90	6	759	34	27	10	27	1.90
30732--30774	16	2.7	16	92	0	77	32	18	11	37	1.87
31086--31178	20	4.7	20	91	0	141	39	21	19	19	1.92
31046--31197	60	2.5	61	73	12	150	34	23	19	23	1.97
31369--31439	22	3.2	22	85	0	88	26	36	12	23	1.91
31777--31865	20	4.5	20	84	1	90	14	15	22	47	1.82
31829--31872	20	2.2	20	91	0	70	13	13	18	54	1.71
34013--34226	103	2.1	103	91	0	347	37	22	12	27	1.90
35402--35445	21	2.1	21	91	0	70	18	27	25	29	1.98
36565--36645	33	2.4	33	83	2	99	45	23	19	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36632--36683	20	2.6	20	90	0	86	40	23	19	17	1.91
37185--37295	42	2.6	42	72	2	107	20	36	18	24	1.94
38807--38845	20	1.9	20	94	5	69	46	23	15	15	1.83
38837--38890	14	3.5	14	73	22	54	46	20	22	11	1.82
38817--38912	33	2.9	34	87	3	140	45	20	20	12	1.83
38927--39022	33	2.8	33	85	3	120	13	20	20	44	1.85
38994--39088	20	4.8	20	92	3	156	20	22	25	32	1.97
41516--41567	24	2.2	24	82	0	59	36	21	19	23	1.95
42396--42459	20	3.2	20	93	0	110	23	20	28	28	1.99
42446--42498	20	2.7	20	93	0	88	18	18	22	39	1.92
42495--42540	21	2.2	21	92	0	74	39	17	26	17	1.91
42814--42847	2	17.0	2	100	0	68	50	0	0	50	1.00
43637--43698	22	2.8	21	92	4	79	41	0	11	46	1.39
43649--43698	22	2.3	22	100	0	100	36	0	8	56	1.29
44707--44765	23	2.6	23	97	0	109	28	15	11	44	1.82
51946--52032	29	3.0	29	93	0	138	14	36	26	21	1.93
52071--52108	20	1.9	20	100	0	76	23	36	28	10	1.88
52095--52127	14	2.4	14	94	0	57	24	39	30	6	1.79
52072--52108	10	3.7	10	86	13	58	24	37	27	10	1.88
52203--52271	33	2.0	37	86	11	101	24	33	31	10	1.89
52222--52253	14	2.3	14	94	0	55	25	37	31	6	1.81
52041--52293	126	2.0	127	96	0	472	23	32	31	12	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52235--52319	33	2.6	33	83	3	100	28	25	37	8	1.85
52437--52493	29	2.0	29	92	0	96	21	29	33	15	1.94
55944--56024	15	5.4	15	89	0	108	11	65	14	8	1.47
55931--56001	30	2.6	26	84	8	79	12	63	15	8	1.51
57145--57200	19	2.9	19	85	12	78	16	21	28	33	1.95
57145--57193	10	4.8	11	83	16	70	16	20	26	36	1.93
57146--57200	9	5.6	10	83	12	78	14	21	29	34	1.93
57213--57267	13	3.8	13	76	21	56	16	47	20	16	1.83
57221--57261	18	2.3	18	100	0	82	17	51	21	9	1.74
57275--57340	29	2.3	29	89	0	96	21	10	27	40	1.86
64361--64416	19	2.9	19	85	12	78	16	21	28	33	1.95
64361--64409	10	4.8	11	83	16	70	16	20	26	36	1.93
64362--64416	9	5.6	10	83	12	78	14	21	29	34	1.93
64437--64477	18	2.3	18	95	0	73	17	48	21	12	1.79
64429--64459	13	2.4	13	94	0	53	16	48	19	16	1.81
64454--64483	13	2.3	13	94	0	51	16	43	23	16	1.87
68388--68431	23	1.9	23	90	0	70	36	20	20	22	1.95
68388--68438	23	2.2	23	85	0	66	41	17	17	23	1.90
69572--69638	12	5.7	12	73	16	50	65	1	0	32	1.02
69574--69638	35	1.9	34	84	9	89	64	1	0	33	1.03
71311--71357	15	3.1	16	87	12	80	78	0	17	4	0.90
71313--71355	8	5.6	8	78	10	54	81	0	16	2	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73903--73952	20	2.5	20	83	6	66	34	26	22	18	1.96
74101--74166	22	3.0	22	88	0	96	24	37	15	22	1.92
74535--74582	20	2.4	20	92	0	78	14	12	25	47	1.79
76483--76576	33	2.8	34	77	3	100	46	20	17	15	1.84
76643--76729	40	2.2	40	89	4	131	22	18	20	37	1.94
76643--76729	20	4.3	20	85	2	113	22	18	20	37	1.94
77210--77266	21	2.7	21	100	0	114	21	35	21	22	1.96
77209--77336	21	6.1	21	77	1	107	21	38	18	21	1.94
78720--78755	14	2.6	14	90	0	54	30	0	22	47	1.52
78872--78967	33	2.9	34	85	3	131	13	23	20	41	1.88
81397--81443	24	2.0	24	100	0	94	34	17	19	29	1.94
81401--81452	24	2.2	24	89	0	77	36	19	17	26	1.94
82281--82347	20	3.3	20	95	0	116	22	19	26	31	1.98
82334--82393	20	3.0	20	90	0	84	23	18	16	41	1.90
82669--82845	20	9.5	20	78	16	175	42	21	18	17	1.89
82692--82772	33	2.4	33	79	2	90	46	23	18	11	1.81
82669--82883	40	5.9	40	75	15	175	43	20	18	17	1.88
82890--82998	20	5.4	20	88	0	146	19	17	22	40	1.91
83477--83575	21	4.7	21	75	3	92	23	33	20	23	1.97
84954--84989	14	2.6	14	90	0	54	30	0	22	47	1.52
85097--85190	20	4.7	20	89	2	145	18	21	25	35	1.95
87604--87657	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87604--87671	24	2.8	24	84	0	64	38	20	17	23	1.93
88499--88565	20	3.3	20	89	0	98	25	19	23	31	1.98
88552--88604	20	2.7	20	96	0	97	18	20	22	37	1.94
88601--88646	21	2.2	21	92	0	74	39	17	26	17	1.91
88842--88877	2	18.0	2	100	0	72	50	0	0	50	1.00
90327--90376	2	25.0	2	100	0	100	50	0	0	50	1.00
94438--94474	18	2.1	18	100	0	74	51	16	5	27	1.66
96151--96197	23	2.1	22	88	7	69	36	25	12	25	1.92
101093--101332	36	6.7	36	93	0	399	17	28	23	30	1.97
104473--104505	2	17.0	2	93	6	59	48	0	0	51	1.00
104839--104935	44	2.3	43	84	7	126	49	0	0	50	1.00
109420--109462	17	2.6	16	82	14	52	32	18	16	32	1.93
109412--109452	17	2.7	15	80	20	50	36	12	21	29	1.90
115973--115997	2	12.5	2	100	0	50	48	0	0	52	1.00
117672--117698	2	13.5	2	100	0	54	48	0	0	51	1.00
118605--118642	18	2.2	18	90	4	60	39	0	0	60	0.97
130294--130344	22	2.3	23	80	13	61	62	0	5	31	1.19
136347--136393	2	23.5	2	100	0	94	48	0	0	51	1.00
152677--152702	6	4.3	6	100	0	52	0	34	19	46	1.50
163126--163157	4	8.0	4	100	0	64	25	25	0	50	1.50
166126--166183	30	1.9	30	93	6	100	51	17	12	18	1.75
166252--166310	2	29.5	2	100	0	118	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170029--170597	282	2.0	284	85	5	769	24	19	20	34	1.96
177782--177833	2	26.5	2	96	3	97	50	0	0	50	1.00
179156--179202	21	2.2	21	92	0	76	21	38	34	6	1.79
181380--181418	17	2.4	17	95	4	71	51	5	0	43	1.24
181474--181498	11	2.3	11	100	0	50	24	0	32	44	1.54
182031--182073	15	2.9	14	80	10	50	44	0	0	55	0.99
195359--195418	15	4.0	15	75	14	61	28	1	3	66	1.17
195359--195420	14	4.1	16	73	23	53	29	1	3	66	1.17
195363--195452	37	2.4	37	81	5	101	32	3	1	63	1.18
195434--195470	2	19.0	2	94	5	67	48	0	0	51	1.00

Tables:   1   2   3   4