genome.fa.s8676.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008676.1 Hibiscus syriacus cultivar Beakdansim tig00111693_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  957917

Tables:   1   2   3   4   

This is table  2  of  4  ( 379 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206746--207419	106	6.4	106	93	0	1073	33	25	18	22	1.97
209131--209168	15	2.4	16	82	4	51	26	2	0	71	1.00
209124--209186	16	4.1	16	75	21	53	28	1	3	66	1.16
209128--209222	42	2.3	41	82	10	115	31	3	1	64	1.16
209204--209234	2	16.0	2	93	6	55	48	0	0	51	1.00
220104--220133	15	1.9	16	93	6	53	6	13	36	43	1.70
220760--220808	24	2.0	24	96	0	89	20	32	4	42	1.71
223266--223342	37	2.1	37	82	4	93	45	2	3	48	1.34
223492--223558	20	3.3	20	97	0	125	23	19	5	50	1.69
223542--223635	47	2.0	47	97	0	179	32	30	6	29	1.83
248906--249042	68	2.0	68	100	0	274	32	18	17	30	1.95
250416--250469	2	27.5	2	96	3	101	50	0	0	50	1.00
250974--251018	2	22.5	2	100	0	90	51	0	0	48	1.00
253861--253886	7	3.7	7	100	0	52	15	15	53	15	1.73
256550--256619	34	2.1	34	94	0	122	34	14	12	38	1.84
259944--260026	41	2.0	41	92	0	139	28	27	26	16	1.97
283007--283063	3	19.0	3	88	0	87	64	0	3	31	1.10
298101--298142	10	4.1	10	87	3	57	45	0	0	54	0.99
301096--301126	14	2.2	14	100	0	62	45	32	0	22	1.53
309461--309494	14	2.4	14	100	0	68	17	14	32	35	1.91
309603--309671	33	2.1	33	100	0	138	31	15	21	30	1.95
310722--310795	23	3.2	23	84	7	96	59	8	10	21	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314518--314668	75	2.1	72	89	3	230	16	19	33	30	1.94
333526--333560	2	17.5	2	93	0	61	48	0	2	48	1.16
335543--335692	49	3.1	49	60	24	109	26	20	16	36	1.93
335531--335723	96	2.0	96	100	0	386	26	19	18	35	1.95
338603--338633	3	10.0	3	93	6	53	32	0	0	67	0.91
342317--342350	18	1.9	17	88	5	50	20	11	20	47	1.81
344146--344177	3	10.7	3	100	0	64	0	31	0	68	0.90
352521--352556	18	2.1	18	89	5	56	16	22	25	36	1.94
370947--370991	21	2.1	21	87	0	63	31	28	24	15	1.96
372505--372567	13	5.5	13	68	27	61	20	26	26	25	1.99
372492--372581	22	4.0	22	97	1	153	21	26	27	24	1.99
373912--373981	26	2.7	24	73	20	61	22	15	0	61	1.34
375176--375209	17	1.9	18	88	5	52	8	20	29	41	1.82
386337--386368	6	5.3	6	100	0	64	34	46	18	0	1.49
386773--386926	21	7.5	21	72	4	134	37	24	19	18	1.94
386791--386904	20	5.6	20	76	4	120	39	24	21	14	1.91
386773--386929	41	3.8	41	96	0	287	36	24	19	19	1.94
387384--387410	14	1.9	14	100	0	54	33	0	0	66	0.92
394366--394403	20	1.9	20	88	0	58	21	15	7	55	1.66
404827--404860	2	17.5	2	87	6	52	44	0	2	52	1.16
404944--404970	14	1.9	14	100	0	54	55	0	37	7	1.28
405148--405182	17	1.9	19	88	11	56	31	8	34	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411610--411637	6	4.7	6	100	0	56	46	0	0	53	1.00
413438--413480	22	2.0	22	85	0	59	9	44	0	46	1.35
436401--436480	40	2.0	40	90	0	124	52	10	5	32	1.56
437394--437440	20	2.5	18	82	6	58	46	6	23	23	1.75
455407--455446	20	2.0	20	85	5	53	35	2	10	52	1.48
456394--456439	22	2.1	22	91	0	74	30	10	17	41	1.84
459939--459977	14	2.9	14	88	3	53	71	0	5	23	1.05
459996--460381	36	10.6	36	80	11	333	43	6	4	45	1.50
459996--460379	73	5.3	71	78	13	329	43	7	4	45	1.50
461635--461689	3	18.3	3	100	0	110	67	0	0	32	0.91
465453--465536	40	2.1	40	88	0	123	35	5	8	50	1.57
467740--467888	73	2.0	74	93	3	257	43	0	12	44	1.41
471392--471466	38	2.0	37	82	10	91	50	4	0	45	1.20
474026--474091	29	2.3	29	94	0	114	33	22	16	27	1.96
490559--490604	20	2.4	19	82	13	58	45	15	15	23	1.84
491448--491483	3	12.0	3	93	0	63	0	33	2	63	1.08
505475--505728	136	1.9	137	84	6	345	29	14	17	38	1.90
514614--514639	10	2.6	10	100	0	52	42	38	11	7	1.70
515253--515283	16	1.9	16	100	0	62	61	6	12	19	1.53
529674--529698	3	8.3	3	100	0	50	68	0	0	32	0.90
532140--532198	31	1.9	31	92	0	100	40	6	10	42	1.65
532223--532265	22	2.0	22	100	0	86	51	13	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532250--532306	18	3.4	18	67	18	59	54	14	0	31	1.40
532225--532273	22	2.2	22	88	3	71	55	14	0	30	1.40
532245--532458	32	6.3	32	76	13	196	52	10	0	36	1.40
532212--532458	86	2.9	85	86	4	318	52	10	0	36	1.39
532277--532437	54	3.0	54	94	0	286	51	11	0	36	1.42
532363--532405	22	2.0	22	100	0	86	51	13	0	34	1.42
532365--532413	22	2.2	22	88	3	71	55	14	0	30	1.40
532390--532446	18	3.4	18	69	18	59	54	12	0	33	1.38
532408--532557	15	9.5	15	74	15	133	51	4	0	44	1.20
537842--537869	2	14.0	2	100	0	56	50	0	0	50	1.00
550418--550500	42	2.0	42	83	4	105	45	6	18	30	1.73
555535--555584	21	2.4	21	96	0	91	32	22	28	18	1.97
557336--557418	38	2.2	37	89	4	130	39	38	8	13	1.75
557840--557884	20	2.2	20	92	0	72	24	28	11	35	1.90
557849--557890	20	2.1	20	86	0	57	33	26	11	28	1.92
576885--576914	2	15.0	2	100	0	60	50	0	0	50	1.00
580371--580417	14	3.3	14	77	11	51	40	0	0	59	0.97
580366--580499	27	4.7	31	77	14	96	47	0	0	51	1.11
580382--580448	14	4.4	15	73	19	59	49	1	0	49	1.10
580379--580528	27	5.8	25	70	17	87	48	0	1	50	1.14
580462--580534	25	2.8	25	76	15	76	47	0	1	50	1.09
580530--580574	23	2.0	23	86	0	63	53	2	2	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580924--580959	15	2.4	15	100	0	72	47	19	0	33	1.50
584509--584561	27	2.0	27	84	0	70	50	11	11	26	1.71
588004--588073	6	11.7	6	87	0	77	35	0	38	25	1.56
592196--592234	18	2.2	18	95	0	69	17	0	20	61	1.34
593202--593258	31	1.9	28	89	7	78	19	21	29	29	1.97
627701--627750	26	1.9	26	84	8	66	36	10	4	50	1.55
631847--631895	19	2.6	19	100	0	98	46	24	18	10	1.79
631986--632354	20	18.5	20	85	4	458	34	26	18	20	1.96
633037--633083	24	2.0	24	87	8	69	25	14	21	38	1.92
633258--633282	12	2.1	12	100	0	50	72	0	28	0	0.86
635566--635872	19	17.4	19	80	16	376	46	18	20	14	1.83
635594--635872	52	5.2	52	93	4	388	46	17	21	14	1.83
635633--635872	71	3.4	71	86	11	373	47	17	20	14	1.83
635566--635910	142	2.5	138	90	6	518	46	18	20	14	1.84
635566--635894	52	6.3	55	88	9	332	46	18	20	14	1.84
635901--636002	19	5.6	19	85	12	151	14	23	17	44	1.86
636109--636145	14	2.6	14	91	0	65	45	21	0	32	1.52
638101--638157	14	3.7	14	77	20	60	45	22	21	10	1.82
638082--638174	33	2.8	33	95	0	168	47	21	20	10	1.80
638045--638179	19	7.6	19	76	16	128	45	23	19	11	1.82
638175--638299	33	3.8	33	97	2	234	6	17	30	45	1.73
638224--638280	14	3.7	14	75	20	60	7	19	29	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638205--638336	52	2.5	50	76	12	149	7	16	30	45	1.75
638175--638336	19	9.3	19	75	19	165	7	16	30	45	1.75
638380--639037	93	7.1	93	99	0	1293	46	18	12	22	1.83
638380--639037	185	3.5	186	99	0	1293	46	18	12	22	1.83
638380--639037	278	2.4	278	99	0	1307	46	18	12	22	1.83
640741--640830	14	5.7	14	74	23	81	42	23	25	8	1.83
640733--640847	33	3.5	33	95	0	212	45	20	24	9	1.81
640740--640852	19	6.8	18	72	23	88	43	22	24	9	1.83
640864--640918	14	3.6	14	73	21	56	9	25	23	41	1.83
640848--640918	33	2.2	33	94	0	124	8	22	25	43	1.81

Tables:   1   2   3   4