genome.fa.s8705.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008705.1 Hibiscus syriacus cultivar Beakdansim tig00111745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1220187

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 577 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236644--236733	39	2.3	38	94	1	153	12	20	22	45	1.83
236716--236800	33	2.5	33	92	1	134	11	23	25	38	1.89
238809--238931	42	2.9	42	80	2	122	22	36	17	22	1.95
238865--238931	21	3.2	21	66	6	55	23	35	20	19	1.95
240290--240324	14	2.6	14	95	4	63	31	0	25	42	1.55
240483--240579	19	5.6	19	67	22	79	12	23	19	44	1.85
240487--240579	33	2.8	33	95	0	168	12	23	19	44	1.85
242873--242897	12	2.1	12	100	0	50	0	28	0	72	0.86
243088--243139	24	2.2	24	82	0	59	38	21	15	25	1.92
244369--244405	14	2.6	14	95	0	65	51	21	0	27	1.48
246272--246338	19	3.5	19	83	4	89	37	23	23	14	1.93
246327--246384	14	3.9	14	77	16	62	50	25	15	8	1.73
246311--246389	32	2.4	33	93	2	133	48	24	17	10	1.78
246396--246491	19	5.6	17	72	21	78	11	19	22	45	1.82
246418--246475	14	3.9	14	79	16	71	8	17	25	48	1.75
246401--246491	32	2.8	33	94	3	166	10	18	23	47	1.80
246476--246529	20	2.8	19	86	5	72	16	24	24	35	1.95
246464--246529	19	3.4	19	81	4	78	15	22	24	37	1.92
247002--247046	18	2.5	18	85	0	63	15	15	42	26	1.87
248365--248402	20	1.9	20	88	0	58	50	21	15	13	1.78
248652--248695	22	2.0	22	95	0	79	18	15	45	20	1.85
248882--248976	20	4.7	20	80	2	91	23	17	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248965--249040	21	3.7	21	78	3	91	17	25	18	39	1.91
248904--249038	41	3.3	41	81	4	130	20	21	20	37	1.94
248984--249050	20	3.3	20	79	4	89	17	23	17	40	1.91
248965--249060	41	2.3	41	96	0	174	18	25	17	38	1.93
248965--249057	20	4.6	20	77	4	87	18	25	18	37	1.93
260055--260092	20	1.9	20	84	10	51	21	23	10	44	1.83
260136--260175	17	2.2	18	86	8	55	70	0	0	30	0.88
260124--260175	21	2.7	19	77	13	61	69	0	0	30	0.89
266669--266785	42	2.8	42	90	0	189	19	17	16	46	1.85
266972--267073	23	4.3	23	73	21	77	48	0	1	49	1.19
267043--267149	30	3.6	30	78	14	105	45	0	1	52	1.11
267065--267147	28	2.9	28	79	19	84	44	0	1	54	1.08
267502--267572	15	4.8	15	76	8	74	33	15	5	45	1.70
267470--267519	20	2.5	20	93	0	91	36	16	8	40	1.77
267502--267572	30	2.4	30	90	2	108	33	15	5	45	1.70
267728--267766	17	2.3	17	82	13	53	61	0	0	38	0.96
267731--267766	16	2.2	17	90	5	56	63	0	0	36	0.94
267737--267818	33	2.4	34	78	11	89	62	1	1	35	1.11
267732--267793	23	2.6	23	76	21	56	62	0	0	37	0.95
272667--272701	13	2.8	13	91	4	54	54	0	0	45	0.99
272668--272799	69	1.9	70	92	1	221	45	9	9	36	1.68
272738--272766	12	2.3	13	94	5	51	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274206--274285	26	3.0	26	87	1	106	35	10	15	40	1.80
274259--274419	66	2.4	68	87	3	220	36	8	16	39	1.78
274233--274632	160	2.4	166	87	4	589	38	7	15	39	1.76
274235--274839	160	3.9	160	80	9	570	38	7	14	39	1.75
274543--274817	81	3.6	80	82	12	358	36	8	15	39	1.77
274629--274760	69	1.9	70	93	1	230	31	8	16	43	1.78
274548--274817	149	1.8	150	90	3	445	36	7	15	39	1.77
274636--274776	69	2.1	67	82	4	167	35	7	15	41	1.76
275502--275568	3	22.3	3	90	0	107	32	28	0	38	1.57
292837--292895	26	2.3	25	85	11	75	25	5	25	44	1.74
295172--295213	2	21.0	2	100	0	84	50	0	0	50	1.00
297499--297528	16	1.9	16	93	6	53	46	0	6	46	1.29
298831--298897	14	4.4	14	76	20	62	23	37	29	8	1.86
298827--298915	34	2.5	36	89	5	128	24	34	29	11	1.90
298845--298878	10	3.4	10	84	15	52	23	38	29	8	1.85
298879--298963	33	2.6	33	86	3	109	27	27	37	8	1.85
299052--299108	29	2.0	29	89	0	87	22	29	31	15	1.95
300533--300591	29	2.0	29	80	6	66	18	33	27	20	1.96
309996--310030	2	17.5	2	100	0	70	51	0	0	48	1.00
312271--312295	2	12.5	2	100	0	50	52	48	0	0	1.00
312295--312330	2	18.0	2	100	0	72	50	0	0	50	1.00
319554--319583	15	2.0	15	93	0	51	63	0	3	33	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325575--325626	26	2.0	26	96	0	95	32	26	7	32	1.85
332404--332448	18	2.6	17	89	6	65	35	2	33	28	1.70
333229--333311	38	2.2	37	91	8	141	38	39	10	10	1.75
333011--333774	253	3.0	249	89	7	1125	38	27	11	23	1.88
333480--333564	37	2.3	37	91	6	136	40	36	10	12	1.78
334913--334954	20	2.2	19	87	8	59	21	23	9	45	1.81
336722--336756	4	8.8	4	93	0	52	31	0	0	68	0.90
336704--336752	16	3.2	15	83	13	64	32	2	2	63	1.17
338015--338195	99	1.8	99	91	4	303	22	11	22	44	1.84
341056--341110	2	27.5	2	96	0	101	50	1	0	47	1.11
341335--341476	39	3.6	37	79	15	167	50	14	4	30	1.63
341304--341497	82	2.4	82	91	0	325	50	13	8	28	1.70
356354--356388	18	2.0	18	88	5	54	31	2	0	65	1.07
359148--359215	34	2.0	34	100	0	136	38	26	14	20	1.91
363559--363593	13	2.6	14	86	13	56	54	0	0	45	0.99
364698--364736	20	2.0	20	94	0	69	35	25	10	28	1.89
364709--364753	20	2.2	20	84	7	56	37	24	11	26	1.89
371130--371187	27	2.2	27	78	3	64	39	0	10	50	1.37
378408--378460	6	9.2	6	80	12	58	79	0	1	18	0.83
378401--378460	23	2.6	25	80	17	76	78	0	1	20	0.84
378398--378465	32	2.2	31	86	7	93	77	0	1	20	0.84
380994--381048	3	18.3	3	100	0	110	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382171--382216	20	2.3	19	89	10	74	54	10	17	17	1.70
382338--382384	20	2.4	19	82	10	67	53	10	17	19	1.72
382347--382389	20	2.3	19	88	11	63	51	11	16	20	1.75
384696--384761	33	2.0	33	87	0	96	28	1	45	24	1.62
385414--385478	25	2.6	25	80	0	85	35	9	13	41	1.77
385766--385829	23	2.8	23	87	0	92	35	6	20	37	1.78
385766--385838	23	3.2	23	82	7	85	34	5	20	39	1.76
385842--385901	21	2.9	21	89	0	93	30	15	10	45	1.78
386039--386089	25	2.0	25	88	0	75	35	7	17	39	1.79
386338--386374	18	2.1	18	89	0	56	32	5	10	51	1.60
386330--386376	24	2.0	24	86	0	67	34	4	14	46	1.64
386633--386718	38	2.2	39	93	2	147	47	20	13	17	1.82
387120--387183	23	2.8	23	85	0	83	35	6	18	39	1.76
387141--387192	23	2.3	23	90	6	79	34	1	19	44	1.62
387770--387796	3	9.0	3	100	0	54	66	0	0	33	0.92
389439--389481	22	2.0	22	90	0	68	37	16	2	44	1.60
389766--389954	101	1.9	101	94	2	335	29	10	11	48	1.72
390076--390174	30	3.2	30	69	23	87	31	6	3	59	1.37
390808--390832	12	2.1	12	100	0	50	40	24	16	20	1.91
396349--396541	69	3.0	67	77	18	248	37	11	5	45	1.65
396470--396499	2	15.0	2	100	0	60	50	0	0	50	1.00
397383--397467	21	4.0	21	90	0	125	34	23	8	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401528--401590	2	31.5	2	100	0	126	50	0	0	49	1.00
403192--403223	2	16.0	2	100	0	64	50	0	0	50	1.00
409635--409718	38	2.2	39	87	6	127	41	36	9	11	1.75
416232--416285	27	2.0	27	96	0	99	31	3	20	44	1.69
416533--416997	6	78.7	6	97	2	872	16	0	32	50	1.46
417161--417295	29	4.7	29	98	0	252	14	34	27	24	1.94
418099--418143	2	22.5	2	100	0	90	48	0	0	51	1.00
424255--424337	24	3.5	24	77	6	78	55	18	9	16	1.68
426717--426776	18	3.3	18	93	4	95	18	21	41	18	1.90
428280--428382	24	4.3	24	82	6	120	54	15	11	18	1.71

Tables:   1   2   3   4   5