genome.fa.s8705.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008705.1 Hibiscus syriacus cultivar Beakdansim tig00111745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1220187

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 577 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428286--428371	12	7.3	11	71	14	55	53	15	12	18	1.73
429653--429701	19	2.5	20	83	6	57	28	22	10	38	1.87
430333--430365	17	2.0	17	88	5	50	39	6	6	48	1.53
434163--434203	20	2.0	20	95	0	73	26	19	17	36	1.94
434165--434216	20	2.6	20	87	0	68	25	21	17	36	1.94
441149--441187	16	2.4	16	91	4	60	33	7	23	35	1.83
441149--441182	16	2.1	17	94	5	61	35	5	23	35	1.79
449888--449954	13	5.0	13	74	17	57	44	0	0	55	0.99
450024--450109	26	3.4	25	75	15	79	52	2	2	43	1.26
450000--450110	52	2.3	48	78	19	110	52	2	1	43	1.26
450088--450125	14	2.7	14	100	0	76	60	0	0	39	0.97
450044--450150	22	4.9	21	74	15	83	53	1	2	42	1.26
450150--450208	11	4.8	12	74	14	50	50	0	1	47	1.11
454252--454286	17	2.0	18	88	5	54	31	0	5	62	1.18
456530--456582	13	4.5	12	75	20	58	22	0	9	67	1.19
462669--462750	44	1.9	41	87	7	119	32	4	29	32	1.79
462671--462761	19	4.4	20	76	17	105	36	4	28	30	1.77
463054--463080	6	4.5	6	100	0	54	0	14	51	33	1.43
463138--463178	19	2.0	20	86	9	57	31	21	21	24	1.98
464502--464565	25	2.5	25	82	14	69	65	4	4	25	1.31
465571--465668	2	52.0	2	71	22	70	55	4	1	39	1.26
465568--465668	7	14.0	7	76	15	91	55	3	0	39	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465568--465668	45	2.2	45	84	10	123	55	3	0	39	1.25
465551--465651	47	2.2	45	84	8	125	54	3	2	38	1.34
465562--465668	29	3.9	27	78	17	98	56	3	1	38	1.28
465568--465668	25	4.0	25	77	15	93	55	3	0	39	1.25
466778--466908	2	68.5	2	73	19	93	51	3	1	43	1.29
468734--468776	3	14.7	3	87	4	52	32	4	0	62	1.15
470987--471045	29	2.0	29	100	0	118	23	13	13	49	1.78
475658--475716	29	2.0	29	100	0	118	23	13	13	49	1.78
482390--482446	14	4.4	14	72	17	50	17	10	12	59	1.60
482389--482439	24	2.1	24	85	0	66	15	9	15	58	1.62
482414--482451	14	2.7	14	87	0	58	23	13	5	57	1.56
482599--482646	20	2.4	20	85	0	69	12	8	16	62	1.53
482599--482646	10	4.8	10	78	0	60	12	8	16	62	1.53
484430--484497	15	4.5	15	81	9	75	11	11	66	10	1.46
484430--484478	16	3.1	16	88	2	55	12	10	67	10	1.43
491185--491245	30	2.0	30	83	0	77	42	13	13	31	1.82
497011--497042	17	1.9	17	93	6	57	65	0	0	34	0.93
497056--497099	18	2.5	17	82	17	54	36	6	0	56	1.26
506668--506708	16	2.5	17	80	11	50	60	0	0	39	0.96
509579--509625	15	3.1	15	81	0	58	10	63	14	10	1.51
512183--512231	15	3.3	15	86	8	66	6	20	12	61	1.52
512375--512423	23	2.2	22	85	3	62	20	0	6	73	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513953--514020	24	2.8	24	70	18	68	27	25	23	23	2.00
513955--514050	48	2.0	48	82	10	115	31	22	20	25	1.98
514266--514324	30	2.0	30	93	0	100	32	23	5	38	1.77
514346--514417	29	2.5	29	100	0	144	38	11	11	38	1.76
521272--521317	2	24.0	2	86	8	69	47	2	0	50	1.13
521846--521886	22	1.9	21	90	5	64	70	4	0	24	1.06
528329--528394	32	2.2	29	83	8	78	39	7	7	45	1.61
528363--528420	28	2.1	28	87	6	82	39	8	12	39	1.73
528508--528576	31	2.3	29	87	5	93	33	15	11	39	1.84
532793--532850	31	1.9	30	85	3	80	24	20	10	44	1.82
544075--544108	15	2.3	15	89	0	50	32	29	20	17	1.96
544588--544744	64	2.5	63	80	8	176	26	18	20	35	1.95
547270--547333	19	3.3	19	76	8	58	46	0	0	53	1.00
549295--549366	20	3.5	20	77	3	90	13	22	25	38	1.91
549360--549412	22	2.4	22	90	0	88	15	16	30	37	1.90
549513--549561	6	8.5	6	88	2	66	30	51	14	4	1.61
549836--549885	22	2.3	22	92	0	91	38	28	18	16	1.91
550020--550072	22	2.4	22	90	0	88	39	28	15	16	1.89
553527--553571	18	2.5	18	96	0	81	33	6	22	37	1.80
554735--554787	27	2.0	25	82	7	61	37	1	5	54	1.35
563759--563799	20	2.0	20	100	0	82	29	9	29	31	1.89
566844--566888	22	2.0	23	91	4	74	33	13	28	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568417--568688	134	2.0	137	79	9	297	21	15	28	34	1.94
569216--569243	4	7.0	4	100	0	56	0	25	0	75	0.81
572163--572192	3	9.7	3	92	7	51	33	0	0	66	0.92
578517--578559	23	1.9	22	90	4	68	44	0	4	51	1.22
580676--580718	12	3.5	12	90	3	59	25	48	13	11	1.77
580719--580825	37	2.9	36	78	6	117	54	0	0	45	0.99
585941--586529	194	3.0	193	79	7	602	40	20	12	26	1.88
589792--589979	32	5.9	31	77	7	148	29	18	19	32	1.96
589810--589928	64	1.9	63	89	1	184	30	17	19	32	1.95
595929--596160	115	2.0	115	100	0	464	35	10	7	46	1.67
596521--596600	32	2.5	32	100	0	160	42	6	10	41	1.63
600431--600474	22	2.0	22	91	4	72	20	25	31	22	1.98
609800--609873	31	2.4	31	88	2	103	32	1	12	54	1.46
612076--612116	3	13.7	3	100	0	82	34	0	0	65	0.93
624950--624996	2	23.5	2	100	0	94	51	0	0	48	1.00
624996--625024	2	14.5	2	100	0	58	51	0	48	0	1.00
625202--625319	53	2.2	53	95	0	218	25	22	17	34	1.96
625480--625932	226	2.0	222	85	5	613	29	11	18	40	1.86
626357--626403	18	2.7	17	72	18	51	31	27	8	31	1.87
627216--627274	29	2.1	28	90	3	91	28	23	16	30	1.97
629120--629162	22	2.0	22	95	0	77	34	20	18	25	1.96
629407--629458	20	2.8	18	75	11	59	25	21	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641410--641446	12	3.1	12	92	0	65	27	8	0	64	1.21
641644--641689	24	2.0	24	86	4	67	63	0	4	32	1.14
641655--641709	26	2.2	24	87	6	74	65	0	1	32	1.03
641962--642356	188	2.1	189	88	2	584	45	8	3	42	1.51
645855--645907	19	2.8	19	91	0	61	26	5	18	49	1.70
645872--645913	19	2.2	19	91	0	66	33	4	14	47	1.65
646823--646859	20	1.9	19	89	10	58	24	18	10	45	1.81
646827--646865	20	2.0	20	89	0	60	25	23	10	41	1.86
648125--648175	19	2.9	17	77	8	50	54	1	0	43	1.11
654514--654562	25	2.0	25	88	11	75	55	4	4	36	1.38
656699--656746	20	2.4	20	96	0	87	35	16	10	37	1.83
657715--657787	23	3.3	23	76	16	75	49	1	6	42	1.38
660521--660640	62	1.9	62	86	0	168	32	10	7	49	1.66
661805--661859	23	2.3	25	93	6	96	50	0	0	49	1.00
661804--661858	12	4.7	12	81	4	67	49	0	0	50	1.00
674850--674908	29	2.0	29	100	0	118	16	11	30	40	1.85
675899--675957	21	2.8	21	86	0	91	10	32	38	18	1.84
678683--678709	7	3.9	7	100	0	54	59	0	14	25	1.36
686261--686393	69	1.9	69	93	3	232	31	13	24	30	1.94
689491--689597	31	3.5	31	68	11	94	44	6	9	39	1.63
689471--689613	60	2.4	60	86	4	200	42	6	11	39	1.67
693587--693618	6	5.3	6	96	0	55	12	34	18	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695492--695531	2	20.0	2	100	0	80	50	0	0	50	1.00
695864--695921	30	2.0	27	83	9	71	41	1	1	55	1.20
697281--697305	12	2.1	12	100	0	50	16	24	8	52	1.70
698138--698167	13	2.3	13	100	0	60	53	0	13	33	1.40
700752--700802	20	2.5	20	93	0	93	15	29	21	33	1.94
704259--704295	16	2.2	18	85	9	51	78	5	5	10	1.08
706698--706984	84	3.4	83	83	5	301	23	21	24	31	1.99
707147--707814	106	6.3	106	90	1	973	23	18	24	33	1.97
711475--711520	19	2.6	18	82	6	58	76	4	4	15	1.11
714846--714885	11	3.5	11	83	10	53	45	2	0	52	1.14

Tables:   1   2   3   4   5