genome.fa.s8708.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008708.1 Hibiscus syriacus cultivar Beakdansim tig00111754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1112311

Tables:   1   2   3   4   

This is table  2  of  4  ( 433 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266912--266997	35	2.5	35	84	0	100	40	20	1	37	1.61
266966--267008	21	2.0	21	100	0	86	46	13	0	39	1.44
267131--267164	16	2.0	18	88	11	54	26	2	5	64	1.30
267633--267880	130	1.9	130	94	0	433	36	13	14	35	1.86
269493--269565	37	2.0	38	84	10	98	49	6	4	39	1.49
271970--271995	3	8.7	3	100	0	52	69	0	0	30	0.89
278818--279037	74	3.0	74	80	5	223	30	18	12	38	1.88
282655--282713	20	2.9	22	83	14	74	30	1	3	64	1.20
286401--286542	59	2.4	60	82	3	171	42	9	7	40	1.67
288626--288651	2	13.0	2	100	0	52	50	0	50	0	1.00
302460--302490	12	2.7	11	90	9	53	87	0	9	3	0.66
302458--302495	18	2.1	18	90	0	58	81	0	10	7	0.87
302910--302947	20	1.9	20	94	0	67	71	5	0	23	1.07
303399--303429	16	1.9	16	93	0	53	19	6	19	54	1.65
307406--307444	19	2.1	19	85	9	53	66	5	0	28	1.12
311778--311831	23	2.3	23	84	6	65	16	18	18	46	1.85
314040--314307	141	1.9	140	82	2	331	25	20	18	35	1.95
316415--316458	10	4.6	10	88	11	74	27	0	0	72	0.85
316415--316458	18	2.3	20	92	7	74	27	0	0	72	0.85
319030--319103	35	2.1	35	87	2	105	44	22	0	32	1.53
326366--326428	3	21.3	3	90	3	83	58	0	1	39	1.07
328769--328825	18	3.2	18	94	0	105	12	19	50	17	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330734--330768	17	2.1	17	89	10	54	31	0	0	68	0.90
336680--336758	39	2.0	39	95	0	140	41	13	13	30	1.84
350195--350235	20	2.0	20	100	0	82	36	9	19	34	1.85
350315--350364	23	2.2	23	85	0	64	42	8	10	40	1.68
354977--355015	19	2.1	19	85	9	53	66	5	0	28	1.12
359432--359485	23	2.3	23	87	6	74	18	18	16	46	1.85
367393--367422	15	1.9	16	93	6	53	53	0	26	20	1.46
369965--370005	20	2.0	20	100	0	82	36	9	19	34	1.85
370085--370134	23	2.2	23	85	0	64	42	8	10	40	1.68
374752--374790	19	2.1	19	85	9	53	66	5	0	28	1.12
377193--377815	310	2.0	310	92	0	1032	31	16	24	27	1.96
377780--378048	141	1.9	141	82	4	337	25	20	19	34	1.96
383118--383161	2	22.0	2	100	0	88	50	0	0	50	1.00
383612--383664	14	4.1	14	74	18	51	56	13	13	16	1.67
383612--383677	24	2.7	24	85	4	87	54	13	13	18	1.71
383963--384895	311	2.9	318	91	3	1440	27	17	16	38	1.91
385124--385158	17	2.1	17	89	10	54	31	0	0	68	0.90
390216--390269	23	2.3	23	93	6	92	18	18	16	46	1.85
391462--391503	20	2.1	20	90	0	66	57	14	9	19	1.64
406406--406674	141	1.9	141	82	1	342	26	20	18	34	1.95
411251--411646	196	2.0	198	96	1	724	38	7	9	44	1.63
414649--414917	141	1.9	141	82	7	341	24	20	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416375--416428	23	2.3	23	84	6	65	18	18	16	46	1.85
417626--417667	20	2.1	20	95	0	75	54	14	11	19	1.70
421609--421651	20	2.3	18	88	8	59	72	2	2	23	1.08
428014--428281	140	1.9	141	82	2	342	26	20	17	35	1.95
429209--429291	29	2.8	29	92	1	139	43	9	14	32	1.78
432224--432306	29	2.8	29	92	1	139	43	9	14	32	1.78
436273--436668	196	2.0	198	94	1	688	38	7	9	44	1.64
439651--439919	141	1.9	141	86	3	380	23	21	20	34	1.96
439664--439959	141	2.1	141	81	3	328	23	20	18	36	1.95
440374--441273	453	2.0	453	91	0	1480	27	18	20	32	1.96
441744--441797	23	2.3	23	84	6	65	18	16	16	48	1.82
442996--443037	20	2.1	20	95	0	75	54	14	11	19	1.70
447575--447617	20	2.2	20	92	8	72	72	4	2	20	1.14
460283--460551	141	1.9	141	82	1	342	26	20	18	34	1.95
462747--462857	39	2.8	39	82	6	109	47	0	0	52	1.00
464504--465109	322	1.9	321	91	3	986	26	17	15	40	1.89
468974--469240	141	1.9	141	84	0	354	25	18	20	35	1.96
468986--469272	141	2.0	141	79	2	299	25	19	19	35	1.95
483746--483935	60	3.2	60	88	3	249	18	33	10	37	1.85
493458--493519	18	3.4	18	79	14	56	41	11	4	41	1.62
493478--493519	18	2.3	18	91	0	66	40	9	7	42	1.65
496812--496873	31	2.0	31	100	0	124	19	12	19	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497130--497176	18	2.7	18	83	3	69	51	19	0	29	1.47
498606--498645	21	2.0	21	95	5	64	30	5	7	57	1.48
502188--502219	2	16.0	2	100	0	64	50	0	0	50	1.00
505032--505073	19	2.1	21	86	8	61	47	2	4	45	1.36
507165--507225	21	3.2	21	63	29	55	32	4	19	42	1.73
507158--507278	35	3.4	37	88	5	167	30	4	19	46	1.68
509271--509460	93	2.0	93	84	4	249	29	10	25	34	1.89
514821--514876	27	2.1	27	86	6	78	37	3	8	50	1.51
515521--515655	18	6.9	18	70	18	76	78	3	15	2	0.99
517592--517692	43	2.3	43	84	0	121	30	29	17	21	1.97
517135--517994	335	2.6	335	96	0	1578	34	24	18	22	1.96
517920--518070	43	3.5	43	91	0	239	30	30	18	20	1.96
518298--518405	43	2.5	43	89	0	153	28	31	18	21	1.97
517592--518372	378	2.1	378	94	0	1375	33	25	18	22	1.97
517963--518939	335	2.9	335	93	0	1639	33	24	18	23	1.96
517257--518734	713	2.1	713	93	0	2517	33	25	18	23	1.96
518632--518734	43	2.4	44	90	4	165	30	33	15	21	1.94
518967--519175	42	5.0	42	84	0	265	25	22	21	31	1.98
519135--519345	116	1.8	116	86	4	309	33	22	16	27	1.95
519365--519737	113	3.3	113	96	0	692	27	23	18	31	1.97
519656--519884	48	4.8	48	79	7	245	29	21	17	31	1.97
519656--519863	96	2.2	96	86	5	287	28	22	16	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525724--525832	35	3.0	36	93	5	184	28	5	21	44	1.74
529576--529635	22	2.7	22	84	7	68	40	3	1	55	1.27
529582--529624	7	6.0	7	79	15	52	41	2	0	55	1.12
531796--531833	11	3.5	11	85	10	51	68	0	0	31	0.90
531846--531886	11	3.8	11	80	6	57	17	0	9	73	1.09
531849--531897	21	2.3	22	92	3	82	12	2	10	75	1.13
532353--532387	7	5.0	7	100	0	70	14	0	42	42	1.45
534024--534059	15	2.4	15	90	0	54	38	0	2	58	1.13
534473--534514	21	2.0	21	95	0	75	33	7	4	54	1.49
535887--536055	93	1.8	93	82	7	218	25	17	25	31	1.97
537431--537571	60	2.3	60	87	0	201	21	32	9	36	1.86
542165--542240	35	2.2	35	88	4	109	40	21	1	36	1.61
542633--542878	130	1.9	128	92	1	411	35	15	13	35	1.87
543336--543367	16	2.0	17	88	11	50	65	6	3	25	1.31
546035--546171	46	3.0	46	81	2	132	34	21	16	27	1.95
548426--548513	24	3.7	24	77	8	90	48	17	11	22	1.78
548417--548527	48	2.3	48	81	3	125	49	15	13	21	1.78
548422--548527	24	4.4	24	72	7	81	49	16	14	20	1.80
550813--550875	27	2.3	27	83	0	81	31	25	25	17	1.97
556257--556338	7	11.6	7	96	1	146	0	54	0	45	0.99
559878--560117	60	4.0	60	86	3	295	19	33	9	37	1.84
559878--560115	120	2.0	120	88	1	352	19	33	9	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580610--580879	60	4.5	60	88	0	369	19	35	8	36	1.83
587197--587333	46	3.0	46	81	2	132	34	21	16	27	1.95
589596--589654	12	4.9	12	72	15	59	52	18	11	16	1.74
589582--589692	24	4.6	24	74	8	91	49	16	13	20	1.79
595373--595416	19	2.3	19	88	0	70	22	11	15	50	1.76
598138--598219	7	11.6	7	96	1	146	0	54	0	45	0.99
601761--601998	120	2.0	120	88	1	352	19	33	9	37	1.84
601761--602012	60	4.2	60	86	1	299	19	33	9	38	1.84
609775--609835	23	2.7	23	92	0	95	34	26	18	21	1.96
609775--609843	23	3.0	23	91	0	93	33	26	18	21	1.97

Tables:   1   2   3   4