genome.fa.s8708.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008708.1 Hibiscus syriacus cultivar Beakdansim tig00111754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1112311

Tables:   1   2   3   4   

This is table  4  of  4  ( 433 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959480--959710	80	2.8	80	88	3	329	19	23	26	29	1.98
962332--962374	19	2.3	19	95	0	77	41	18	20	18	1.90
962344--962403	21	3.0	20	83	7	77	36	18	20	25	1.94
962344--962403	19	3.1	19	81	9	75	36	18	20	25	1.94
968382--968444	33	1.9	33	90	6	101	23	14	31	30	1.94
970487--970529	20	2.2	20	95	0	77	27	23	20	27	1.99
970870--970916	19	2.4	20	82	3	69	44	23	19	12	1.85
970924--970976	19	2.8	19	94	0	88	11	20	18	49	1.78
972572--972651	42	1.9	41	87	10	117	20	15	41	23	1.89
972594--972651	21	2.8	21	71	10	64	22	13	39	24	1.90
972998--973104	20	5.4	20	84	3	101	37	24	22	15	1.93
973077--973135	19	3.4	19	70	29	67	45	20	20	13	1.84
973096--973151	14	3.6	14	71	28	51	42	25	21	10	1.85
973077--973156	33	2.4	33	97	0	151	45	22	21	11	1.83
973163--973279	19	6.6	19	70	22	85	14	22	20	42	1.88
973168--973255	33	2.7	33	96	0	158	12	20	20	46	1.82
973244--973287	20	2.3	19	88	4	61	20	22	18	38	1.93
973839--973886	18	2.7	18	86	0	78	14	12	43	29	1.82
975206--975279	20	3.8	20	74	1	69	47	18	17	16	1.83
975509--975552	22	2.0	22	95	0	79	18	15	45	20	1.85
975739--975803	20	3.2	20	86	6	96	29	16	23	30	1.96
975739--975811	20	3.7	20	80	7	94	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975723--975854	41	3.2	41	80	10	162	25	16	22	35	1.95
975719--975853	20	6.7	20	72	10	78	25	17	22	34	1.95
975786--975874	41	2.2	41	83	4	108	22	19	21	37	1.95
975881--975935	21	2.7	20	78	18	67	38	18	23	20	1.93
978104--978156	2	26.5	2	92	0	88	50	3	0	45	1.19
979966--980012	3	15.3	3	78	12	51	63	2	0	34	1.06
980260--980671	55	7.7	54	80	8	371	29	24	14	32	1.95
980211--980671	110	4.3	109	79	9	382	30	23	14	31	1.94
993642--993698	2	28.5	2	92	0	96	50	3	0	45	1.18
995510--995562	3	17.3	3	81	11	63	64	1	0	33	1.05
998689--998716	2	14.0	2	100	0	56	50	0	0	50	1.00
999601--999818	60	3.6	60	89	0	301	38	9	33	18	1.84
999629--999843	60	3.6	60	86	2	166	39	9	33	18	1.82
1002744--1002796	26	2.0	26	96	0	97	24	20	15	39	1.91
1011237--1011274	3	13.0	3	94	5	69	68	0	0	31	0.90
1011486--1011781	139	2.2	138	81	11	335	25	18	29	27	1.98
1012716--1012768	8	6.8	8	83	12	74	9	0	9	81	0.89
1012715--1012769	9	6.8	9	80	19	68	9	0	9	81	0.87
1012716--1012768	15	3.4	16	87	10	74	9	0	9	81	0.89
1017818--1018186	183	2.0	183	95	4	674	20	24	13	42	1.87
1024361--1024394	18	1.9	18	94	5	61	70	5	5	17	1.28
1026015--1026064	3	17.0	3	95	4	93	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1027249--1027324	35	2.2	35	92	0	125	39	23	1	35	1.63
1027710--1027966	126	2.0	126	90	3	410	36	14	12	36	1.84
1028294--1028356	28	2.3	27	78	8	63	46	1	3	49	1.27
1047478--1047530	8	6.4	8	81	16	63	77	0	9	13	0.99
1048531--1049308	55	14.4	55	78	10	620	29	15	27	27	1.96
1048688--1048856	54	3.2	53	81	6	200	31	20	26	21	1.97
1048595--1048872	105	2.6	107	80	9	289	31	16	25	25	1.97
1048863--1049300	53	8.2	53	83	3	561	28	13	28	28	1.95
1048538--1049308	108	7.2	108	81	10	758	29	15	27	27	1.96
1051469--1051520	24	2.1	25	82	10	63	34	13	26	25	1.93
1052855--1052897	15	2.8	15	92	3	68	55	0	2	41	1.12
1056664--1056728	28	2.3	28	100	0	130	53	6	3	36	1.41
1057260--1057306	24	2.0	24	86	0	67	55	0	4	40	1.19
1059816--1059845	9	3.3	9	100	0	60	20	0	20	60	1.37
1060951--1060988	2	19.0	2	100	0	76	50	0	0	50	1.00
1062117--1062257	60	2.3	60	90	0	210	36	9	33	20	1.85
1066306--1066347	22	1.9	22	95	0	75	30	4	40	23	1.75
1066308--1066360	22	2.5	22	87	3	72	35	5	37	20	1.77
1066332--1066382	26	2.0	26	88	0	75	37	5	41	15	1.72
1081768--1082373	322	1.9	322	91	3	988	40	15	17	26	1.89
1083895--1083973	36	2.2	36	86	4	115	34	11	36	17	1.86
1084048--1084122	34	2.2	34	83	9	91	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086800--1087068	141	1.9	141	82	1	342	34	18	20	26	1.95
1099735--1099777	18	2.2	20	92	8	72	20	2	4	72	1.14
1104318--1104359	20	2.1	20	95	0	75	19	11	14	54	1.70
1105557--1105610	23	2.3	23	84	6	65	48	16	16	18	1.82
1106082--1106981	453	2.0	453	91	0	1480	32	20	18	27	1.96
1107437--1107705	141	1.9	141	86	3	380	34	20	21	23	1.96
1111549--1112311	317	2.4	320	89	5	1153	39	15	17	27	1.90

Tables:   1   2   3   4

The End!