genome.fa.s8743.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008743.1 Hibiscus syriacus cultivar Beakdansim tig00111832_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  979257

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500979--501033	2	27.5	2	100	0	110	50	0	0	49	1.00
504917--505046	60	2.2	60	85	2	172	36	17	12	33	1.87
505308--505444	60	2.3	60	81	7	154	35	10	16	37	1.83
505482--505526	17	2.4	18	85	10	56	46	0	4	48	1.22
506428--506498	19	3.7	19	100	0	142	30	26	16	25	1.97
506466--506608	65	2.2	63	84	9	182	29	23	18	28	1.98
512316--512390	21	3.6	20	77	8	62	32	26	20	21	1.97
512337--512410	21	3.4	22	79	5	87	28	24	21	25	1.99
512315--512410	44	2.2	42	81	7	113	31	25	19	23	1.98
513293--513317	13	1.9	13	100	0	50	36	0	16	48	1.46
513844--514051	65	3.2	63	80	12	226	30	23	18	27	1.97
518414--518446	17	2.0	17	88	5	50	36	0	6	57	1.23
519063--519097	18	1.9	18	100	0	70	28	11	14	45	1.79
520200--520294	49	1.9	49	89	0	145	16	27	35	20	1.94
521264--521321	23	2.5	23	97	0	107	25	20	15	37	1.92
522054--522105	19	2.7	20	87	3	70	36	32	11	19	1.87
522703--522735	14	2.3	15	84	10	50	48	18	12	21	1.80
523009--523172	81	2.0	81	100	0	328	28	20	10	40	1.86
524713--524781	24	2.8	26	83	12	85	31	24	5	37	1.79
524746--524781	12	3.0	12	91	0	63	36	25	5	33	1.79
525096--525150	11	5.5	11	72	24	59	29	25	20	25	1.99
525089--525158	19	3.7	19	94	0	122	27	25	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525126--525280	64	2.4	63	80	4	150	30	18	19	32	1.95
542730--542782	23	2.2	26	90	10	85	30	24	5	39	1.78
543097--543250	64	2.4	64	81	4	168	29	18	19	33	1.95
544522--544778	98	2.6	100	76	7	245	34	14	21	29	1.93
544701--544812	20	5.6	20	76	5	75	33	11	23	32	1.90
548019--548070	20	2.6	20	96	0	95	38	26	13	21	1.90
548060--548158	21	4.8	20	72	6	72	36	23	19	21	1.95
548125--548318	20	9.6	20	81	5	221	35	25	19	19	1.95
548125--548318	60	3.2	60	83	0	253	35	25	19	19	1.95
548697--548765	32	2.2	32	91	0	111	11	21	20	46	1.82
548697--548746	18	3.0	18	69	22	54	12	22	22	44	1.85
548889--548943	14	3.6	14	73	21	56	40	23	27	9	1.85
548889--548959	33	2.2	33	92	0	115	42	25	23	8	1.82
548955--549052	19	5.7	19	70	22	81	10	24	22	42	1.84
548977--549066	14	5.7	14	74	23	81	8	25	23	42	1.83
548960--549074	33	3.5	33	95	0	212	9	24	20	45	1.81
550770--551151	185	2.1	186	98	0	748	22	12	18	46	1.83
550770--551149	93	4.1	93	98	0	744	22	12	18	46	1.83
551193--551321	19	7.3	19	75	17	125	45	28	17	8	1.77
551229--551321	33	2.8	32	91	4	150	46	27	18	7	1.76
551193--551321	52	2.5	52	74	14	140	45	28	17	8	1.77
551317--551451	19	7.6	19	76	16	137	10	19	24	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551339--551395	14	3.7	14	77	20	60	8	21	24	45	1.80
551322--551414	33	2.8	33	98	0	177	9	20	22	47	1.79
553268--553340	38	1.9	38	97	0	137	28	1	16	53	1.51
553263--553327	19	3.4	19	64	8	51	24	1	15	58	1.46
553322--553357	14	2.6	14	95	0	63	33	0	22	44	1.53
553464--553545	19	4.6	19	82	14	120	43	18	23	14	1.86
553552--553871	52	6.0	52	94	4	550	14	21	16	46	1.83
553574--553899	19	18.4	19	80	15	405	14	20	17	47	1.82
553552--553871	161	2.0	157	93	3	552	14	21	16	46	1.83
553593--553899	33	8.8	33	80	12	280	14	20	17	47	1.82
556206--556230	12	2.1	12	100	0	50	0	28	0	72	0.86
556405--556451	24	2.0	24	87	8	69	38	21	14	25	1.92
557125--557533	20	20.5	20	85	5	486	20	18	25	35	1.95
563137--563164	2	14.0	2	100	0	56	0	50	0	50	1.00
563308--563422	58	2.0	58	98	0	221	40	11	23	24	1.87
565244--565287	17	2.6	17	75	10	54	72	0	0	27	0.85
565250--565312	28	2.3	29	81	10	78	61	0	0	38	0.96
566069--566099	16	2.0	15	93	6	53	25	0	29	45	1.54
570026--570132	40	2.7	40	78	11	112	38	25	13	23	1.91
570150--570217	20	3.4	20	75	13	68	39	23	13	23	1.90
570820--570846	7	3.9	7	100	0	54	40	0	14	44	1.46
571093--571185	20	4.6	20	80	6	98	20	18	24	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571110--571205	40	2.4	40	84	5	113	20	19	26	33	1.97
571287--571314	3	9.3	3	100	0	56	64	0	0	35	0.94
580099--580130	7	4.6	7	92	0	55	68	0	0	31	0.90
581824--582219	196	2.0	201	92	4	658	41	14	13	29	1.85
585954--586063	35	3.1	35	67	16	82	42	10	0	46	1.43
586055--586151	35	2.8	34	73	14	99	41	6	8	44	1.59
586187--586273	44	2.0	42	95	4	156	33	4	13	48	1.63
589584--589709	50	2.5	50	83	7	166	15	34	28	20	1.94
589998--590330	111	3.0	111	95	0	594	36	7	10	44	1.68
591843--591877	18	1.9	18	94	0	61	34	28	14	22	1.93
592218--592279	6	10.3	6	75	0	52	30	19	37	12	1.89
592397--592468	23	3.0	24	73	21	69	25	5	4	65	1.32
601762--601825	23	2.8	23	80	4	67	17	21	25	35	1.95
606963--607014	23	2.3	23	86	0	68	21	26	26	25	1.99
606975--607030	23	2.4	23	81	0	58	26	26	19	26	1.99
611492--611539	23	2.0	24	88	4	71	64	0	4	31	1.12
613602--613628	6	4.5	6	100	0	54	0	18	14	66	1.25
637094--637131	18	2.1	19	90	5	60	15	50	18	15	1.79
637357--637381	2	12.5	2	100	0	50	48	0	0	52	1.00
637751--637831	37	2.2	37	93	0	135	38	2	11	48	1.52
638014--638093	37	2.2	37	95	0	142	38	2	10	48	1.50
637752--638272	262	2.0	262	97	0	988	32	10	13	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639435--639472	4	9.2	4	94	5	67	47	0	0	52	1.00
640274--640314	21	2.0	21	85	0	55	36	4	39	19	1.73
643456--643528	37	1.9	38	91	2	121	58	8	2	30	1.41
643714--643769	27	2.1	27	96	0	103	12	33	8	44	1.73
649135--649241	31	3.5	31	88	2	153	51	6	12	29	1.64
649411--649457	23	2.1	22	88	4	67	34	8	2	55	1.42
650317--650389	26	2.9	27	82	13	93	45	1	0	53	1.09
650296--650450	66	2.4	64	87	7	215	40	0	2	56	1.18
650962--651021	31	1.9	31	93	0	102	43	10	6	40	1.64
661599--661640	3	14.0	3	100	0	84	33	0	0	66	0.92
661822--661848	3	9.0	3	100	0	54	33	0	0	66	0.92
661940--661972	5	6.4	5	93	6	57	78	3	18	0	0.87
663321--663358	14	2.6	15	87	4	51	47	0	5	47	1.24
664065--664118	2	27.0	2	100	0	108	50	0	0	50	1.00
668100--670806	909	3.0	905	95	1	4849	43	11	10	33	1.76
670328--670365	20	1.9	20	94	0	67	21	23	10	44	1.83
671814--671889	36	2.1	36	85	7	100	48	1	2	47	1.24
672770--672803	12	2.7	13	86	9	52	44	0	2	52	1.16
677034--677084	2	25.5	2	100	0	102	49	0	0	50	1.00
681001--681038	19	2.0	20	85	15	53	47	2	2	47	1.30
681422--681460	18	2.2	18	85	0	51	17	10	25	46	1.80
688730--688764	16	2.4	14	90	9	52	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689590--689747	80	2.0	80	89	2	246	45	9	13	31	1.75
692399--692453	24	2.3	24	84	3	67	70	3	1	23	1.12
696380--696453	20	3.7	20	81	0	85	28	24	22	24	2.00
696629--696671	22	2.0	22	100	0	86	25	41	13	18	1.88
697068--697120	19	2.8	19	97	0	97	9	16	22	50	1.74
697127--697173	20	2.3	20	88	0	67	19	17	25	38	1.92
697141--697196	20	2.8	20	88	0	76	12	16	21	50	1.78
697160--697203	20	2.2	20	87	0	61	13	13	18	54	1.71
699180--699255	20	3.8	20	87	0	89	18	14	25	42	1.88
699180--699255	40	1.9	40	86	0	107	18	14	25	42	1.88

Tables:   1   2   3   4   5