genome.fa.s8743.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008743.1 Hibiscus syriacus cultivar Beakdansim tig00111832_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  979257

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935628--935661	14	2.3	15	90	5	52	32	2	2	61	1.26
943055--943082	6	4.7	6	100	0	56	17	0	0	82	0.68
944518--944882	180	2.0	180	99	0	721	30	3	10	55	1.50
946753--946822	12	5.8	12	76	6	70	52	18	14	14	1.74
946758--946845	24	3.7	24	82	0	95	48	18	12	20	1.80
946751--946859	48	2.3	48	80	3	121	48	17	14	19	1.81
947468--947503	15	2.4	15	90	0	54	33	22	27	16	1.95
947476--947513	15	2.7	14	88	8	51	28	23	31	15	1.96
947504--947541	18	2.1	18	95	0	67	10	18	50	21	1.76
949671--949740	12	5.8	12	76	6	70	52	18	14	14	1.74
949676--949763	24	3.7	24	82	0	95	48	18	12	20	1.80
949669--949777	48	2.3	48	80	3	121	48	17	14	19	1.81
950891--950976	43	2.0	43	88	4	129	23	22	2	52	1.59
952299--952334	15	2.4	15	95	0	63	33	25	27	13	1.94
952300--952342	7	6.1	7	80	20	54	30	25	30	13	1.94
952307--952358	13	3.8	13	87	5	59	25	25	34	15	1.95
952321--952376	26	2.2	26	90	0	85	19	21	41	17	1.91
952300--952358	8	8.4	8	71	25	53	25	25	33	15	1.95
952338--952375	13	2.9	13	88	0	58	18	18	44	18	1.87
958742--958779	19	2.0	20	94	5	69	28	15	28	26	1.96
958747--958908	63	2.6	63	84	3	191	31	20	20	27	1.98
959456--959540	22	3.9	22	95	0	152	16	23	32	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
960032--960126	3	31.7	3	91	4	156	34	1	0	64	1.01
960032--960137	21	5.1	21	84	12	139	36	0	0	62	1.02
960573--960607	18	1.9	18	88	0	52	45	14	40	0	1.45
960594--960640	20	2.3	20	92	0	85	68	8	23	0	1.17
973268--973309	19	2.2	20	91	4	68	30	4	11	52	1.59
974072--974384	84	3.7	84	97	0	583	27	13	21	37	1.91
975103--975775	225	3.0	224	90	5	1011	36	14	19	29	1.91
975103--975777	113	6.0	113	91	3	1006	36	14	19	29	1.91
976094--976181	3	29.7	3	93	6	153	35	0	0	64	0.94
976647--976690	18	2.4	19	92	7	81	68	9	22	0	1.18

Tables:   1   2   3   4   5

The End!