genome.fa.s8745.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008745.1 Hibiscus syriacus cultivar Beakdansim tig00111834_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1915556

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 927 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235009--235056	21	2.3	21	85	0	60	20	12	39	27	1.89
236779--236858	32	2.4	32	80	14	83	60	2	0	37	1.11
240843--240940	29	3.3	29	66	9	72	36	13	15	34	1.86
246983--247065	38	2.2	36	78	18	98	55	8	8	27	1.59
247063--247147	33	2.5	33	83	7	100	63	11	2	22	1.39
247165--247197	13	2.4	14	85	10	50	69	9	6	15	1.34
249377--249424	12	4.1	12	75	5	53	66	2	0	31	1.03
249384--249427	23	1.9	23	90	9	72	70	2	0	27	0.99
249614--249653	17	2.3	18	91	8	73	20	25	27	27	1.99
249637--249670	12	2.8	12	100	0	68	29	17	17	35	1.93
251143--251183	21	2.0	21	85	4	57	31	7	0	60	1.24
251155--251186	15	2.2	15	94	5	57	34	6	0	59	1.23
259746--259781	13	2.8	13	86	0	54	25	0	0	75	0.81
260980--261023	23	1.9	23	90	0	70	45	0	4	50	1.22
295871--295910	2	20.0	2	100	0	80	50	0	0	50	1.00
296651--296718	12	5.7	12	70	13	59	26	2	1	69	1.12
296642--296681	19	2.1	19	86	9	55	27	0	2	70	1.01
296960--296989	2	15.0	2	100	0	60	50	0	0	50	1.00
311113--311152	17	2.3	18	86	4	55	67	0	2	30	1.04
312404--312501	2	53.0	2	79	15	113	46	0	0	53	1.00
312800--312871	32	2.2	32	85	0	99	51	9	22	16	1.73
315368--315525	70	2.3	70	92	2	255	34	14	10	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315438--315818	182	2.1	181	90	1	593	28	15	13	42	1.85
315690--316150	111	4.1	112	92	0	737	25	14	14	45	1.82
315690--316150	223	2.1	223	91	1	737	25	14	14	45	1.82
318193--318239	25	1.9	24	83	12	60	53	2	4	40	1.32
320440--320530	3	30.3	3	88	0	137	32	1	0	65	1.00
322112--322164	17	3.1	18	72	10	56	54	0	5	39	1.24
333276--333333	19	2.9	18	78	14	53	86	8	5	0	0.71
333273--333332	13	4.8	13	85	6	63	86	8	5	0	0.69
333273--333334	31	1.9	33	83	9	83	85	8	6	0	0.74
333273--333325	1	53.0	1	76	0	52	88	7	3	0	0.61
333274--333325	13	3.8	13	87	10	68	88	7	3	0	0.62
333662--333698	19	1.9	19	94	0	65	29	5	13	51	1.63
334459--334617	52	3.1	52	94	2	284	25	15	22	36	1.94
335248--335779	119	4.5	119	93	2	891	36	15	20	28	1.92
335934--336021	3	29.7	3	88	2	133	31	1	0	67	0.99
337594--337646	17	3.1	18	72	10	56	54	0	5	39	1.24
342833--342883	22	2.4	21	86	3	66	50	0	3	45	1.20
343025--343067	20	2.3	19	84	11	61	25	30	6	37	1.82
347574--347670	49	2.0	49	100	0	194	55	10	9	24	1.63
351794--351842	22	2.2	22	82	7	64	77	4	0	18	0.92
368264--368306	5	8.0	5	94	5	59	25	55	18	0	1.42
368793--368831	6	6.5	6	100	0	78	0	15	51	33	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374634--374676	22	2.0	21	86	8	61	74	2	0	23	0.93
384132--384166	18	1.9	18	94	0	61	22	2	8	65	1.34
386573--386598	2	13.0	2	100	0	52	0	50	0	50	1.00
395894--395918	13	1.9	13	100	0	50	24	36	0	40	1.55
396440--396595	69	2.3	69	80	2	179	28	19	14	37	1.92
399447--399488	21	1.9	23	85	9	61	35	19	2	42	1.64
404458--404505	23	2.1	23	84	0	60	39	4	4	52	1.40
404945--404973	2	15.0	2	92	7	51	48	0	0	51	1.00
405423--405476	29	1.9	28	85	14	76	53	12	0	33	1.39
406542--406593	19	2.7	19	82	5	52	53	11	5	28	1.60
410896--410972	26	3.3	25	63	32	62	25	12	28	32	1.93
410857--411005	44	3.5	44	88	2	214	28	13	26	30	1.94
412663--412729	24	2.9	23	76	12	73	16	10	16	56	1.66
412658--412737	23	3.4	23	77	5	88	16	10	16	57	1.64
412701--412744	23	1.9	23	85	0	61	11	11	18	59	1.61
412649--412754	47	2.2	48	81	3	126	16	11	14	57	1.65
415198--415312	60	1.9	60	85	3	160	29	25	6	38	1.82
415471--415649	60	3.0	62	76	10	176	39	3	22	34	1.71
425814--425843	3	10.0	3	100	0	60	66	0	0	33	0.92
426328--426371	22	2.0	23	86	4	63	36	18	22	22	1.95
433904--433950	23	2.0	23	92	8	78	6	12	27	53	1.63
434045--434083	2	19.5	2	89	0	60	51	5	0	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436700--436738	18	2.2	18	86	4	53	64	2	2	30	1.21
437465--437537	31	2.4	30	86	4	103	43	12	16	27	1.83
437465--437547	31	2.8	29	80	8	96	40	10	16	31	1.83
446292--446336	23	2.0	21	87	8	63	44	2	4	48	1.35
446705--447246	262	2.1	264	86	3	745	38	14	18	28	1.90
451602--451638	15	2.5	15	91	4	58	59	0	0	40	0.97
454599--454662	29	2.2	29	100	0	128	48	12	15	23	1.79
465813--465846	2	17.0	2	100	0	68	50	0	0	50	1.00
470653--470707	24	2.3	24	87	0	74	60	7	18	14	1.57
476397--476428	9	3.7	9	91	8	57	25	0	0	75	0.81
477092--477150	2	29.5	2	100	0	118	50	0	0	49	1.00
477261--477508	123	2.0	123	96	0	460	32	14	16	36	1.90
480792--480880	32	2.8	32	81	3	92	44	11	2	41	1.52
482547--482584	2	18.5	2	94	5	67	47	2	0	50	1.15
484453--484486	2	16.5	2	93	6	59	47	0	2	50	1.16
493339--493377	17	2.4	17	95	4	71	51	5	0	43	1.24
495292--495316	6	4.2	6	100	0	50	52	0	0	48	1.00
501267--501303	19	2.0	20	89	10	60	40	10	10	37	1.75
502809--502844	16	2.2	16	100	0	72	5	33	44	16	1.71
506646--507520	128	6.9	128	96	0	1542	22	25	20	31	1.98
507923--508019	32	3.0	32	81	6	115	38	2	4	55	1.31
508536--508629	21	4.5	21	92	5	154	21	26	34	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508633--508680	21	2.3	21	85	0	60	22	12	39	25	1.89
510389--510419	16	1.9	16	93	0	53	58	3	0	38	1.15
510398--510474	32	2.4	31	79	14	86	61	1	0	37	1.05
511017--511044	2	14.0	2	100	0	56	50	0	0	50	1.00
511729--511775	19	2.5	19	100	0	94	34	4	6	55	1.45
512847--512954	49	2.2	50	96	3	200	46	17	18	17	1.85
521541--521602	23	2.7	23	81	16	76	11	19	16	53	1.72
521558--521610	23	2.3	23	87	6	72	11	18	18	50	1.76
525633--525689	2	28.5	2	100	0	114	50	0	0	49	1.00
526346--526375	15	2.0	15	100	0	60	46	6	6	40	1.56
537811--537848	20	1.9	20	94	0	67	28	18	28	23	1.98
542162--542230	36	1.9	36	100	0	138	17	20	8	53	1.69
546078--546141	32	2.0	32	100	0	128	56	3	28	12	1.51
549762--549794	16	2.1	16	94	0	57	33	24	24	18	1.97
556148--556188	21	2.0	21	100	0	82	46	14	19	19	1.84
556544--556670	20	6.3	20	89	0	182	21	18	14	45	1.85
560326--560361	2	18.0	2	100	0	72	50	0	0	50	1.00
562033--562074	20	2.2	20	86	4	59	23	42	7	26	1.80
564700--564748	4	12.2	4	78	8	55	48	24	4	22	1.67
565496--565583	44	2.0	44	88	0	131	30	18	11	39	1.86
566817--566859	18	2.3	19	92	4	70	48	9	2	39	1.48
568665--568756	2	45.5	2	97	2	175	48	0	1	50	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572803--572872	31	2.3	31	100	0	140	32	15	24	27	1.95
574211--574283	35	2.0	37	82	10	89	50	4	1	43	1.29
592358--592409	23	2.3	23	86	0	77	21	38	21	19	1.94
593999--594036	18	2.1	18	90	0	58	47	28	21	2	1.64
598524--598561	14	2.7	14	100	0	76	28	13	23	34	1.92
598617--598647	4	7.8	4	100	0	62	25	0	0	74	0.82
606860--606895	15	2.4	15	86	13	56	75	5	2	16	1.12
608261--608313	18	3.1	18	79	15	67	75	0	1	22	0.90
608271--608325	28	2.0	28	86	13	78	69	0	3	27	1.05
608333--608517	38	5.1	36	79	8	189	45	6	3	43	1.47

Tables:   1   2   3   4   5   6   7   8