genome.fa.s8745.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008745.1 Hibiscus syriacus cultivar Beakdansim tig00111834_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1915556

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 927 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1740595--1740623	14	2.1	14	93	6	51	27	6	0	65	1.18
1742426--1742463	18	2.1	18	95	0	67	28	31	18	21	1.97
1742807--1742859	9	5.9	9	79	0	61	33	20	33	11	1.88
1742816--1742859	21	2.1	21	86	0	61	34	20	34	11	1.88
1742947--1743038	49	2.0	45	85	8	121	27	5	2	65	1.26
1747845--1747877	6	5.5	6	96	0	57	48	3	48	0	1.17
1750021--1750223	103	2.0	103	91	1	327	31	15	10	41	1.82
1761011--1761041	6	5.2	6	92	0	53	3	16	32	48	1.62
1765923--1766015	21	4.5	21	78	4	100	39	18	24	17	1.91
1766004--1766057	20	2.7	20	94	0	90	29	27	20	22	1.98
1765923--1766015	41	2.3	41	100	0	186	39	18	24	17	1.91
1766567--1766609	20	2.2	20	95	0	77	9	18	18	53	1.70
1767929--1767973	18	2.5	18	88	0	72	26	44	15	13	1.83
1770037--1770072	14	2.6	14	90	0	54	30	0	22	47	1.52
1770179--1770232	14	3.5	14	77	22	63	48	20	20	11	1.80
1770256--1770293	20	1.9	20	94	0	67	15	21	23	39	1.92
1771339--1771392	24	2.2	24	90	0	81	24	16	20	38	1.92
1771567--1771591	12	2.1	12	100	0	50	72	0	28	0	0.86
1773872--1774002	19	7.7	19	64	23	76	43	19	22	15	1.87
1773872--1773998	33	3.8	33	85	4	184	43	18	22	15	1.88
1773873--1774005	66	2.0	66	94	0	230	42	18	21	17	1.90
1773998--1774040	20	2.2	20	83	4	52	18	18	23	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1774181--1774217	14	2.6	14	91	0	65	45	24	0	29	1.53
1775614--1775697	42	2.0	42	85	0	114	22	16	39	21	1.92
1777704--1777878	20	9.8	19	65	20	65	40	25	21	12	1.88
1777724--1777852	33	3.9	33	91	1	186	37	27	21	12	1.90
1777824--1777894	19	3.7	19	92	3	115	47	22	18	11	1.80
1778450--1778502	20	2.7	20	93	0	88	26	20	28	24	1.99
1778511--1778564	20	2.7	20	97	0	99	25	18	24	31	1.97
1778451--1778567	61	1.9	61	85	0	162	23	17	24	33	1.97
1778451--1778585	61	2.2	61	81	2	155	22	20	24	32	1.98
1778635--1778675	21	2.0	21	85	0	55	34	31	17	17	1.93
1778907--1778979	28	2.8	25	76	11	92	46	12	8	32	1.71
1786488--1786537	25	2.0	25	100	0	100	28	24	28	20	1.99
1786647--1786680	14	2.3	15	90	5	52	26	17	14	41	1.88
1788456--1788487	4	7.8	4	96	3	55	50	21	0	28	1.49
1800764--1800969	21	9.5	21	75	12	157	29	24	23	23	1.99
1800764--1800969	42	4.8	42	73	17	188	29	24	23	23	1.99
1800764--1801059	132	2.2	132	89	3	436	27	24	22	25	2.00
1800959--1801023	21	3.1	21	73	2	60	21	21	21	35	1.96
1800933--1801115	90	2.0	92	96	2	343	24	23	20	31	1.98
1800764--1801150	132	2.9	131	83	6	403	26	22	22	28	1.99
1801068--1801140	21	3.5	21	69	14	69	19	19	26	35	1.95
1801706--1801731	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1802780--1802813	17	1.9	17	88	5	50	38	2	2	55	1.30
1804490--1804527	11	3.3	12	82	10	53	60	5	0	34	1.19
1805898--1805938	16	2.5	17	80	11	50	48	2	9	39	1.49
1807007--1807047	17	2.3	19	87	8	59	70	2	0	26	0.99
1815908--1815948	18	2.4	17	84	8	55	41	4	2	51	1.36
1816208--1816577	158	2.3	158	84	4	453	49	7	17	25	1.72
1819309--1819859	6	92.8	6	95	3	1001	49	17	0	33	1.46
1820082--1820113	2	16.0	2	100	0	64	50	0	0	50	1.00
1821652--1821712	29	2.1	29	84	0	77	31	13	4	50	1.62
1835930--1836047	23	5.3	23	83	7	120	30	25	16	27	1.96
1835930--1836048	46	2.7	45	85	8	147	30	25	16	27	1.97
1835965--1836048	23	3.7	23	88	0	123	30	25	17	26	1.97
1849065--1849663	297	2.0	298	99	0	1182	33	17	14	33	1.90
1850717--1850966	77	3.3	77	98	1	484	26	16	23	33	1.96
1851018--1851218	43	4.6	44	73	7	169	24	19	5	49	1.70
1851317--1851350	14	2.5	14	90	4	52	61	0	17	20	1.34
1852169--1852241	20	3.7	20	85	7	103	28	27	20	23	1.99
1852395--1852428	12	2.9	12	86	4	52	17	41	5	35	1.74
1852983--1853036	24	2.2	24	86	0	72	24	16	18	40	1.90
1855486--1855523	20	1.9	20	88	0	58	42	23	18	15	1.89
1855542--1855593	14	3.2	16	73	24	54	11	25	19	44	1.84
1856110--1856147	20	1.9	20	94	0	67	39	23	21	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1856166--1856230	19	3.7	19	86	13	95	13	21	18	46	1.84
1858241--1858360	20	6.4	19	74	13	88	43	23	20	13	1.86
1858316--1858406	14	5.9	14	72	20	74	49	23	16	10	1.77
1858300--1858411	33	3.4	33	93	1	190	48	23	17	10	1.79
1858418--1858499	18	4.6	19	79	14	104	13	20	20	45	1.85
1858418--1858527	19	6.1	19	72	15	63	15	21	20	42	1.88
1858418--1858519	33	2.8	34	76	23	102	14	22	20	42	1.89
1858484--1858520	20	1.9	20	88	5	58	21	27	18	32	1.97
1859014--1859058	18	2.5	18	85	0	63	15	15	42	26	1.87
1860371--1860444	20	3.8	20	81	1	69	43	22	17	16	1.88
1860914--1861030	61	1.9	61	87	0	171	21	17	24	35	1.95
1860893--1861027	20	6.7	20	83	5	146	22	18	25	32	1.97
1861098--1861138	21	2.0	21	85	0	55	34	31	17	17	1.93
1868734--1868783	21	2.3	21	86	10	66	66	2	24	8	1.29
1872574--1872598	2	12.5	2	100	0	50	52	0	0	48	1.00
1883777--1883860	31	2.7	31	81	0	96	38	14	10	36	1.81
1899808--1900017	108	1.9	108	95	0	375	24	20	17	37	1.94
1906676--1906739	21	3.2	21	63	19	55	31	28	17	23	1.97
1906638--1906772	39	3.5	38	90	8	202	29	28	19	22	1.98
1909663--1909720	23	2.5	23	80	5	64	50	15	22	12	1.77
1912096--1912148	26	2.0	26	85	0	70	35	11	15	37	1.83

Tables:   1   2   3   4   5   6   7   8

The End!