genome.fa.s8745.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008745.1 Hibiscus syriacus cultivar Beakdansim tig00111834_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1915556

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 927 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608337--608517	36	5.0	37	76	10	167	45	6	3	44	1.46
608468--608534	26	2.6	25	72	11	64	49	7	1	41	1.40
608539--608703	34	4.7	34	76	12	104	44	6	3	44	1.47
608394--608641	125	2.0	124	94	3	437	43	6	4	45	1.49
608571--608703	34	3.8	34	76	21	107	46	7	3	42	1.50
608615--608742	36	3.5	36	76	13	120	48	8	3	39	1.50
608631--608744	39	3.0	38	78	10	117	46	8	4	40	1.55
609399--610137	84	8.9	84	76	5	676	24	20	24	30	1.99
609331--610137	165	4.9	164	85	5	917	24	20	24	30	1.99
609354--610161	249	3.2	249	77	4	912	24	20	24	29	1.99
613357--613401	19	2.4	19	88	3	65	66	8	11	13	1.44
615075--615104	15	1.9	16	93	6	53	73	6	3	16	1.18
616465--616522	10	6.1	10	74	25	63	72	0	1	25	0.94
616537--616718	38	5.0	37	77	9	167	45	6	3	44	1.46
616597--616849	128	2.0	128	95	3	456	45	6	3	44	1.47
616741--616925	36	5.0	37	80	9	182	45	7	3	43	1.49
616789--616950	36	4.4	37	75	16	126	46	8	3	41	1.48
616963--616994	8	4.1	8	92	8	57	87	0	0	12	0.54
616966--616994	15	1.9	15	100	0	58	89	0	0	10	0.48
623979--624023	21	2.1	21	100	0	90	31	17	20	31	1.96
628390--628523	66	2.0	66	95	0	241	20	31	26	21	1.98
629567--629594	9	3.1	9	100	0	56	0	10	0	89	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631447--631516	35	2.2	32	82	12	81	38	15	27	18	1.91
631461--631533	35	2.1	36	92	2	121	31	12	38	17	1.87
631570--631596	12	2.2	12	100	0	54	29	44	14	11	1.80
631659--631710	2	27.0	2	76	7	54	48	0	0	51	1.00
631622--631710	44	2.1	42	89	4	133	50	0	0	49	1.00
631658--631707	17	3.1	17	77	11	59	50	0	0	50	1.00
631622--631710	38	2.3	39	85	11	114	50	0	0	49	1.00
632023--632098	15	5.1	15	75	9	75	55	2	2	39	1.28
632023--632098	31	2.6	29	75	8	73	55	2	2	39	1.28
632891--632985	20	4.7	20	78	7	93	33	26	17	22	1.96
633725--633778	24	2.2	24	90	0	81	22	16	20	40	1.91
633952--633976	12	2.1	12	100	0	50	72	0	28	0	0.86
636243--636300	20	2.9	20	97	0	107	37	24	22	15	1.93
636338--636383	19	2.4	19	96	0	83	15	17	17	50	1.79
636523--636559	14	2.6	14	86	0	56	48	21	0	29	1.50
638746--638790	21	2.1	21	87	0	63	31	28	24	15	1.96
640428--640494	22	3.0	22	100	0	134	19	26	26	26	1.99
641508--641563	20	2.8	20	91	0	85	39	25	21	14	1.91
641566--641695	19	7.3	19	70	18	82	13	20	23	43	1.86
641582--641640	14	3.9	14	76	20	64	10	16	23	49	1.77
641566--641656	33	2.8	33	98	0	173	12	18	21	47	1.81
641641--641695	20	2.8	19	83	8	65	16	23	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642212--642277	18	3.7	18	95	0	123	13	12	46	27	1.78
643596--643654	20	3.0	20	87	0	73	42	22	18	16	1.89
643922--643963	22	1.9	22	95	0	75	19	16	40	23	1.91
644145--644208	20	3.2	20	95	0	119	26	20	28	25	1.99
644145--644256	20	5.6	20	81	6	109	25	19	24	31	1.98
644125--644262	41	3.4	41	74	9	138	25	18	22	34	1.96
644185--644280	41	2.3	41	80	3	104	22	20	19	36	1.95
655941--655980	21	1.9	21	85	10	55	57	0	2	40	1.12
667151--667204	24	2.2	24	96	0	99	31	14	14	38	1.87
667450--667497	21	2.3	21	88	0	69	12	33	18	35	1.89
668286--668344	23	2.6	22	74	15	66	62	22	0	15	1.32
669260--669355	39	2.5	41	76	11	94	38	15	2	43	1.59
669481--669514	14	2.3	15	90	5	52	32	0	8	58	1.29
669610--669668	21	2.6	22	80	15	75	40	6	1	50	1.39
669619--669666	25	2.0	24	88	12	71	37	6	2	54	1.38
670801--670860	23	2.6	23	94	0	102	26	18	18	36	1.94
683176--683253	31	2.6	30	69	16	72	43	10	10	35	1.73
683135--683253	60	2.0	59	83	9	152	39	12	10	36	1.79
684092--684121	2	15.0	2	100	0	60	50	0	0	50	1.00
684904--684935	13	2.5	13	95	5	57	21	12	9	56	1.64
687031--687060	2	15.0	2	100	0	60	50	0	0	50	1.00
687208--687245	20	1.9	20	94	0	67	34	15	5	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
687703--687734	14	2.4	14	94	5	57	12	25	46	15	1.81
701606--701842	122	2.0	121	88	2	350	40	9	12	37	1.76
709984--710061	34	2.3	34	84	0	102	14	12	15	57	1.65
710013--710072	24	2.5	24	83	0	66	11	11	16	60	1.60
710262--710370	24	4.7	23	84	6	130	11	11	19	57	1.63
710275--710343	23	3.0	23	89	4	102	10	13	21	55	1.67
710303--710353	10	4.8	10	81	13	66	7	11	21	58	1.58
710303--710370	33	2.0	34	91	2	111	8	11	20	58	1.59
714309--714346	20	1.9	20	88	0	58	10	26	36	26	1.89
714329--714390	21	2.9	21	85	4	79	20	25	32	20	1.98
722152--722575	157	2.7	159	85	8	575	27	15	6	50	1.68
728427--728462	15	2.3	16	95	4	65	47	5	25	22	1.73
730530--730582	26	2.0	26	100	0	106	50	3	18	26	1.64
736556--736586	15	2.0	16	93	6	55	45	6	25	22	1.76
739739--739800	31	2.0	31	96	0	115	43	20	6	29	1.77
740279--740340	31	2.0	31	93	0	106	22	33	17	25	1.96
743739--743768	16	1.9	16	93	6	53	23	13	6	56	1.60
744958--745015	30	1.9	30	85	0	80	29	25	27	17	1.97
747174--747218	22	2.0	22	100	0	90	53	4	8	33	1.52
756082--756171	31	2.8	31	88	6	128	15	18	11	54	1.70
760337--760364	14	2.0	14	100	0	56	28	14	21	35	1.92
760681--760884	102	2.0	102	97	0	381	33	17	19	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
760961--761004	15	2.5	19	72	27	60	29	18	27	25	1.98
760971--761016	15	3.1	15	100	0	92	28	19	26	26	1.99
760975--761016	8	5.5	8	77	11	52	26	21	26	26	1.99
761864--761956	31	3.0	31	85	3	125	23	19	22	34	1.96
766219--766304	42	2.0	42	86	4	120	37	5	10	46	1.62
767169--767214	3	15.3	3	95	0	83	65	0	34	0	0.93
771692--771781	33	2.7	33	79	10	94	52	3	7	36	1.47
774644--774721	18	4.5	18	79	17	85	57	1	0	41	1.07
774642--774700	8	6.4	9	75	21	52	61	1	0	37	1.07
774634--774715	34	2.5	33	82	5	105	58	1	0	40	1.06
776619--776694	30	2.5	31	82	8	93	46	18	21	14	1.84
778283--778321	20	2.0	20	85	5	53	41	10	30	17	1.83
781224--781315	40	2.5	36	78	14	105	42	5	7	44	1.56
781245--781330	40	2.2	40	93	0	145	45	9	10	34	1.71
781438--781481	23	1.9	23	81	9	54	45	13	2	38	1.56
781586--781652	14	5.1	14	78	14	61	11	7	14	65	1.45
781603--781655	24	2.2	24	86	0	70	11	7	15	66	1.44
789409--789449	16	2.6	16	96	0	73	29	24	4	41	1.75
792984--793010	13	2.1	13	100	0	54	37	22	7	33	1.82
793536--793590	18	3.1	18	86	2	76	60	0	0	40	0.97
793528--793581	18	2.8	20	77	11	67	59	1	0	38	1.08
794272--794330	30	1.9	30	82	6	73	35	8	6	49	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
796819--796952	60	2.2	60	84	5	164	32	18	14	34	1.92
797950--798036	31	2.8	31	82	1	102	36	12	13	36	1.83
805853--805895	4	10.8	4	89	0	59	25	4	20	48	1.69
811288--811361	35	2.1	35	97	0	139	33	27	12	27	1.92
811768--811803	17	2.1	17	89	5	54	47	0	0	52	1.00
819179--819533	178	2.0	176	84	7	459	20	10	17	51	1.75
824187--824244	24	2.5	24	81	13	59	39	8	0	51	1.33
833020--833216	36	5.5	35	88	4	279	28	25	26	19	1.98
836624--836695	31	2.3	31	85	0	108	19	16	11	52	1.73
838245--838310	30	2.2	30	88	0	96	39	13	16	30	1.87

Tables:   1   2   3   4   5   6   7   8