genome.fa.s8773.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008773.1 Hibiscus syriacus cultivar Beakdansim tig00111881_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1239499

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 660 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230406--230839	216	2.0	218	92	2	732	33	17	19	29	1.95
231314--231492	64	2.8	64	81	5	193	29	14	23	32	1.94
232985--233030	16	2.8	16	83	6	56	52	26	0	21	1.47
234519--234555	18	2.0	19	89	5	58	51	35	10	2	1.51
235805--235831	11	2.5	11	100	0	54	33	0	14	51	1.43
236193--240396	263	16.0	263	84	2	5007	37	15	19	28	1.92
235361--240396	524	9.6	522	82	4	5228	37	15	18	28	1.92
240612--240755	76	1.9	76	84	2	191	37	29	16	16	1.91
241832--241858	11	2.5	11	100	0	54	48	0	18	33	1.49
242359--242383	2	12.5	2	100	0	50	52	0	0	48	1.00
242684--242731	23	2.1	23	88	0	69	35	12	18	33	1.89
243459--243495	18	2.1	18	89	0	56	51	10	5	32	1.60
243699--243757	23	2.6	23	91	0	91	38	18	8	33	1.81
245163--245202	21	1.9	21	85	10	55	25	5	15	55	1.60
245347--245393	20	2.4	19	79	10	58	19	17	8	55	1.67
245515--245560	20	2.3	20	89	10	76	17	17	10	54	1.70
246868--246941	3	25.7	3	79	20	79	68	1	0	29	0.97
247303--247596	84	3.5	83	79	7	297	25	17	24	32	1.97
247660--247890	124	1.9	124	90	3	376	25	16	25	32	1.96
247784--248302	240	2.1	245	86	5	717	25	18	23	31	1.97
248263--248345	43	1.9	43	90	0	130	21	16	30	31	1.96
250970--251020	12	4.0	12	79	20	59	70	0	1	27	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250966--251005	3	13.3	3	84	10	55	72	0	0	27	0.85
252721--252786	17	3.7	18	88	8	91	12	22	46	18	1.81
252787--252817	11	2.8	11	95	0	53	41	19	22	16	1.89
259481--259535	5	10.8	5	77	11	58	7	20	52	20	1.69
259474--259511	17	2.2	17	100	0	76	10	23	47	18	1.79
259481--259537	19	2.8	19	89	7	78	8	19	52	19	1.71
259480--259544	19	3.3	19	76	20	62	9	23	49	18	1.76
260530--260837	84	3.7	84	83	3	349	24	18	23	33	1.96
260901--261131	124	1.9	124	92	1	392	25	17	24	32	1.96
261023--261110	32	2.6	34	78	8	101	21	18	26	34	1.96
261025--261493	240	1.9	242	88	3	710	24	18	23	32	1.97
261504--261587	43	1.9	44	85	2	116	23	17	26	32	1.97
262267--262357	44	2.1	44	95	0	164	32	21	15	29	1.94
264325--264375	21	2.5	21	90	3	77	17	37	7	37	1.79
265761--265807	2	23.5	2	100	0	94	51	0	0	48	1.00
265844--265878	2	18.0	2	88	5	54	51	0	2	45	1.16
266711--266737	11	2.5	11	100	0	54	74	0	0	25	0.83
267736--267766	12	2.6	12	94	0	53	12	22	45	19	1.84
267874--267905	12	2.6	12	95	5	55	12	15	46	25	1.81
267924--268003	36	2.2	37	86	6	119	16	36	15	32	1.89
269120--269263	76	1.9	76	84	2	191	37	29	16	16	1.91
270981--271027	21	2.4	19	85	7	58	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271206--271282	22	3.5	22	79	13	79	51	0	1	46	1.09
271206--271267	21	2.9	22	86	9	76	53	0	1	45	1.10
271563--274789	647	5.0	647	97	1	5903	40	12	9	37	1.76
274770--274887	29	4.1	27	76	14	76	35	9	0	54	1.39
274770--274860	29	3.1	28	82	7	85	34	9	1	54	1.41
274879--275011	29	4.7	29	73	20	102	37	6	2	54	1.38
277148--277184	18	2.0	19	89	5	58	51	35	10	2	1.51
278438--278464	11	2.5	11	100	0	54	33	0	14	51	1.43
277991--283029	262	19.3	262	81	4	5240	37	15	18	28	1.92
283245--283388	76	1.9	76	84	2	191	37	29	16	16	1.91
284498--284524	11	2.5	11	100	0	54	48	0	18	33	1.49
285927--285991	3	21.7	3	79	20	50	69	1	0	29	0.98
285927--285985	8	7.5	8	77	19	54	69	1	0	28	0.98
286340--286647	84	3.7	82	79	7	266	25	17	24	32	1.96
286711--286941	124	1.9	124	88	3	349	27	15	25	32	1.96
286835--287353	240	2.1	245	85	5	690	25	18	23	31	1.97
287314--287396	43	1.9	43	90	0	130	21	16	30	31	1.96
289955--290005	12	4.0	12	79	20	59	70	0	1	27	0.98
289951--289990	3	13.3	3	84	10	55	72	0	0	27	0.85
291706--291744	17	2.3	17	100	0	78	12	23	46	17	1.83
291777--291807	11	2.8	11	95	0	53	41	19	22	16	1.89
299064--299123	5	11.8	5	79	10	68	6	20	53	20	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299059--299094	17	2.1	17	100	0	72	11	25	44	19	1.83
299064--299127	24	2.8	23	88	6	103	9	20	51	18	1.73
300118--300425	84	3.7	84	83	3	349	24	18	23	33	1.96
300489--300719	124	1.9	124	92	1	392	25	17	24	32	1.96
300611--300698	32	2.6	34	78	8	101	21	18	26	34	1.96
300613--301081	240	1.9	242	88	3	699	24	18	23	33	1.97
301092--301175	43	1.9	44	85	2	116	23	17	26	32	1.97
301855--301945	44	2.1	44	95	0	164	32	21	15	29	1.94
303912--303961	21	2.4	21	90	3	75	18	38	6	38	1.75
305349--305373	2	12.5	2	100	0	50	52	0	0	48	1.00
305411--305483	2	37.0	2	94	2	130	50	0	1	47	1.09
306314--306350	11	3.3	11	96	3	65	72	0	0	27	0.84
307342--307384	12	3.6	12	96	0	77	11	23	46	18	1.82
307382--307469	38	2.3	38	84	5	117	47	0	0	52	1.00
307486--307517	12	2.6	12	95	5	55	12	15	46	25	1.81
307536--307613	36	2.2	37	83	6	106	17	37	12	32	1.88
308735--308878	76	1.9	76	84	2	191	37	29	16	16	1.91
309597--309623	11	2.5	11	100	0	54	48	0	18	33	1.49
310120--310160	2	20.5	2	100	0	82	51	0	0	48	1.00
311037--311106	3	23.7	3	81	18	69	70	1	0	28	0.96
311469--311762	84	3.5	83	79	7	297	25	17	23	32	1.97
311826--312056	124	1.9	124	90	1	374	25	15	25	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311950--312468	240	2.1	244	86	4	724	25	18	24	31	1.97
312429--312511	43	1.9	43	90	0	130	21	16	30	31	1.96
315324--315467	76	1.9	76	84	2	191	37	29	16	16	1.91
317250--317291	17	2.5	17	84	3	50	50	2	0	47	1.14
317408--317465	22	2.5	23	83	8	73	51	0	1	46	1.11
317795--320348	639	4.0	643	96	1	4596	39	12	10	38	1.76
320329--320420	28	3.1	28	81	9	78	33	9	1	55	1.40
320448--320567	29	4.4	28	76	11	97	36	6	2	54	1.40
323989--324015	11	2.5	11	100	0	54	33	0	14	51	1.43
323734--325181	262	5.5	262	71	11	1298	36	16	17	29	1.91
324511--324537	11	2.5	11	100	0	54	33	0	14	51	1.43
325035--325061	11	2.5	11	100	0	54	33	0	14	51	1.43
325423--329621	262	16.0	263	84	3	4958	37	15	19	28	1.92
323541--329621	524	11.7	522	85	4	5584	37	15	18	28	1.92
332556--332592	13	3.0	12	88	7	56	75	0	0	24	0.80
332559--332597	13	3.1	13	81	7	53	71	2	0	25	0.98
333161--333196	17	2.2	16	90	5	54	41	0	0	58	0.98
340896--340962	3	21.0	3	88	11	82	65	0	1	32	1.02
340896--340962	20	3.5	18	83	16	82	65	0	1	32	1.02
340892--340962	17	4.3	17	78	18	78	66	0	1	32	1.01
348122--348154	15	2.1	16	88	5	50	36	0	0	63	0.95
348517--348556	14	2.9	14	96	3	73	20	37	35	7	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348612--348805	29	6.7	29	98	0	361	23	28	34	13	1.93
351838--351869	3	10.7	3	100	0	64	31	0	0	68	0.90
354079--354117	21	1.9	20	84	5	51	43	5	0	51	1.24
361723--361776	25	2.1	25	82	6	63	22	11	7	59	1.56
361968--362010	21	2.0	21	100	0	86	39	0	13	46	1.44
361979--362064	35	2.5	35	84	0	100	37	1	20	40	1.61
362195--362254	29	2.1	29	87	6	86	28	8	28	35	1.86
362729--362764	2	18.0	2	100	0	72	50	0	0	50	1.00
363361--363437	31	2.5	31	78	0	91	38	12	12	35	1.82
368266--368316	26	2.0	26	85	7	70	25	23	21	29	1.99

Tables:   1   2   3   4   5   6