genome.fa.s8773.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008773.1 Hibiscus syriacus cultivar Beakdansim tig00111881_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1239499

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 660 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1043412--1043457	22	2.0	24	87	8	69	34	2	19	43	1.63
1043424--1043467	22	2.0	22	81	0	52	40	0	18	40	1.50
1043671--1043695	2	12.5	2	100	0	50	0	0	48	52	1.00
1044542--1044619	31	2.5	31	87	0	102	55	12	8	23	1.65
1044971--1045034	31	2.1	31	93	0	110	31	7	7	53	1.58
1045148--1045206	30	1.9	31	89	3	93	52	3	1	42	1.28
1045186--1045244	22	2.5	24	83	8	68	52	1	3	42	1.28
1048220--1048290	18	3.8	18	72	7	70	29	29	18	22	1.97
1048814--1048876	24	2.8	22	76	9	58	23	25	20	30	1.99
1048855--1048998	63	2.3	64	84	6	177	23	19	21	35	1.96
1051051--1051420	80	4.6	80	93	1	600	22	20	25	31	1.98
1056449--1056818	80	4.6	80	94	1	609	22	21	25	31	1.98
1059737--1059762	2	13.0	2	100	0	52	50	0	0	50	1.00
1061815--1061855	18	2.3	18	100	0	82	56	0	9	34	1.32
1063378--1063506	59	2.2	59	88	0	186	29	25	17	27	1.98
1068160--1068189	14	2.1	14	93	0	51	46	10	6	36	1.64
1073563--1073598	18	2.0	18	94	0	63	33	19	27	19	1.96
1077141--1077172	10	3.1	10	91	8	55	18	31	31	18	1.95
1081777--1081821	18	2.6	17	86	6	72	35	0	24	40	1.56
1083164--1083198	18	1.9	18	94	0	61	20	22	31	25	1.98
1086385--1086445	31	1.9	32	86	6	88	21	19	18	40	1.91
1088506--1088554	22	2.4	19	72	18	53	48	4	2	44	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1090122--1090155	2	17.0	2	100	0	68	50	0	0	50	1.00
1096557--1096604	22	2.2	22	92	0	78	35	12	25	27	1.92
1100686--1100719	16	2.1	17	88	5	52	44	20	0	35	1.52
1118770--1119055	141	2.0	142	96	2	531	33	17	20	28	1.95
1132370--1132459	31	2.9	31	100	0	180	17	6	30	45	1.74
1133036--1133099	17	3.7	17	91	2	101	28	29	9	32	1.88
1133877--1133979	46	2.3	44	80	6	109	34	18	21	25	1.96
1134993--1135048	20	2.8	20	89	2	87	23	30	26	19	1.98
1136973--1137308	170	2.0	166	95	4	606	45	10	14	29	1.78
1146793--1147020	76	2.9	78	90	2	361	36	15	13	34	1.87
1148966--1149768	401	2.0	401	91	0	1286	37	16	19	26	1.93
1152366--1152408	23	1.9	23	90	4	70	32	9	13	44	1.76
1155644--1155689	15	3.1	15	82	14	60	39	0	0	60	0.97
1155846--1155875	15	2.0	15	100	0	60	20	6	20	53	1.67
1156081--1156131	27	1.9	26	88	4	75	21	5	15	56	1.60
1159543--1159593	3	16.7	3	83	4	66	62	0	1	35	1.06
1162903--1162937	18	1.9	18	94	0	61	31	2	17	48	1.61
1163026--1163100	38	1.9	37	83	5	87	14	12	13	60	1.60
1171854--1171900	19	2.5	19	83	10	62	27	17	29	25	1.97
1171805--1171950	64	2.3	64	86	5	197	29	16	25	28	1.97
1172120--1172159	20	2.0	21	85	14	57	45	7	5	42	1.54
1180399--1180445	19	2.5	19	83	10	62	27	17	29	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1180354--1180495	64	2.2	64	86	6	189	28	16	24	29	1.97
1180665--1180704	20	2.0	21	85	14	57	45	7	5	42	1.54
1181877--1181928	26	2.0	25	96	3	95	38	28	7	25	1.83
1197109--1197154	17	2.7	17	93	0	83	28	28	10	32	1.91
1197937--1198038	45	2.3	45	83	5	118	34	17	21	26	1.96
1199084--1199134	20	2.5	20	93	0	84	21	33	23	21	1.97
1210875--1211182	78	3.9	78	94	0	546	36	14	14	35	1.87
1219200--1219229	12	2.5	12	94	0	51	0	60	6	33	1.23
1220867--1221696	53	15.7	53	91	2	1158	25	26	17	31	1.97
1223024--1223099	29	2.7	28	78	15	84	7	13	1	77	1.04
1223050--1223096	11	4.6	11	77	20	57	6	10	0	82	0.82
1223054--1223094	18	2.3	18	95	0	73	7	12	0	80	0.90
1228516--1228567	20	2.5	21	93	3	88	11	25	19	44	1.84
1228516--1228604	21	4.3	21	81	7	101	15	23	19	41	1.89
1234709--1234772	22	2.9	22	80	0	83	26	25	15	32	1.95
1236094--1236154	31	2.0	31	84	9	81	32	26	8	32	1.86

Tables:   1   2   3   4   5   6

The End!