genome.fa.s8785.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008785.1 Hibiscus syriacus cultivar Beakdansim tig00111917_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1341157

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 675 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196817--197114	105	2.8	105	96	0	551	22	18	24	34	1.96
197863--197906	22	2.1	21	83	8	54	2	18	2	77	0.98
197883--198005	63	1.9	66	83	5	162	11	26	12	50	1.73
204559--204599	20	2.0	21	85	4	57	14	19	4	60	1.51
208466--208523	9	6.9	9	75	18	54	75	1	3	18	1.03
208459--208523	4	15.8	4	75	12	51	75	1	4	18	1.05
208551--208617	34	2.1	33	83	13	86	53	1	10	34	1.44
208637--208663	2	13.5	2	100	0	54	51	0	0	48	1.00
209154--209192	20	2.0	20	89	0	60	12	38	35	12	1.82
214223--214606	55	7.0	55	90	0	572	36	10	16	35	1.84
214223--214602	164	2.3	165	91	0	609	36	11	16	35	1.85
220121--220181	20	3.1	19	72	11	59	27	37	22	11	1.89
220122--220181	21	2.9	21	73	7	61	28	36	23	11	1.90
229421--229468	20	2.3	22	85	7	64	37	10	27	25	1.88
229351--229542	94	2.0	94	86	2	269	36	12	23	26	1.91
229889--230381	55	8.9	55	93	0	815	35	12	17	34	1.87
232000--232155	39	4.0	38	80	5	161	24	32	10	32	1.90
232000--232153	78	2.0	79	82	6	188	24	31	11	32	1.90
237675--237726	13	3.8	13	74	18	52	25	0	3	71	1.03
237672--237723	19	2.8	19	77	11	54	26	0	3	69	1.06
249249--249319	32	2.2	32	90	5	108	52	4	8	35	1.51
264816--264905	36	2.5	35	80	18	105	66	1	5	26	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266395--266586	99	1.9	98	84	1	249	24	18	20	36	1.95
267661--267698	17	2.4	17	86	8	53	0	18	2	78	0.86
267662--267822	81	1.9	85	82	5	204	9	19	9	60	1.56
267746--267789	18	2.4	18	80	0	52	0	13	2	84	0.73
277421--277475	24	2.3	24	96	0	101	36	18	25	20	1.94
278387--278444	26	2.2	24	80	14	62	58	0	6	34	1.25
278496--278554	26	2.4	24	78	13	66	69	0	5	25	1.09
278494--278554	24	2.5	24	82	10	72	67	0	6	26	1.15
278500--278590	20	4.2	21	72	20	64	67	0	7	25	1.17
278514--278596	36	2.2	38	79	18	93	65	0	8	26	1.21
283993--284046	27	2.0	27	89	3	83	24	16	29	29	1.97
285621--285659	3	13.7	3	89	5	55	74	25	0	0	0.82
285773--285835	2	31.5	2	100	0	126	50	0	0	49	1.00
290827--290919	43	2.2	43	82	0	105	19	16	20	44	1.87
294206--294264	28	2.1	28	100	0	118	42	13	13	30	1.83
298074--298154	41	2.0	41	95	0	144	39	19	17	23	1.92
301186--301228	13	3.2	13	86	6	50	20	2	0	76	0.89
306410--306560	81	1.9	81	84	0	203	28	20	11	39	1.87
309653--309781	54	2.4	54	88	5	181	23	20	20	36	1.95
309754--310182	54	7.9	54	90	0	633	31	19	19	29	1.96
311509--311601	44	2.1	44	87	0	132	36	17	10	35	1.84
318384--318408	6	4.2	6	100	0	50	32	52	0	16	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318834--318864	15	2.1	15	93	0	53	6	16	67	9	1.39
319843--319877	15	2.3	15	90	0	52	20	0	14	65	1.26
320108--320180	21	3.5	21	73	1	67	23	26	19	31	1.98
320107--320194	20	4.3	20	77	5	68	27	25	18	29	1.98
323523--323570	20	2.4	20	85	0	60	33	16	22	27	1.96
323524--323577	20	2.7	20	77	5	56	35	20	22	22	1.96
323573--323683	52	2.1	54	94	3	199	45	18	22	13	1.84
323582--323689	19	5.8	19	84	12	145	46	17	21	14	1.84
323693--323778	19	4.7	19	75	15	92	13	22	18	45	1.85
323880--323917	14	2.7	15	84	12	53	47	18	0	34	1.49
325284--325359	21	3.6	21	68	7	55	25	23	28	22	1.99
327311--327406	20	5.2	20	71	21	91	46	17	22	12	1.82
327309--327468	19	9.1	19	68	21	116	45	19	23	11	1.83
327309--327463	33	4.5	33	87	5	211	46	19	22	11	1.82
327358--327446	14	5.6	14	68	23	52	43	21	23	11	1.84
327495--327566	20	3.5	20	84	5	92	12	16	19	51	1.76
328130--328364	20	11.6	20	75	8	199	20	17	24	38	1.92
328130--328363	41	5.8	41	86	3	305	19	17	24	38	1.92
328350--328402	20	2.7	20	88	5	72	15	18	22	43	1.87
329358--329398	21	2.0	21	100	0	82	19	14	9	56	1.66
329666--329737	37	1.9	37	88	5	110	44	8	11	36	1.70
333721--333779	30	2.0	30	82	0	73	22	35	5	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337152--337186	6	5.8	6	96	0	61	11	34	0	54	1.37
338058--338093	18	2.0	18	94	0	63	22	30	22	25	1.99
339251--339302	23	2.3	23	80	16	63	19	5	9	65	1.42
339336--339381	22	2.1	22	84	8	58	26	0	10	63	1.27
339436--339476	18	2.2	19	86	4	57	29	9	0	60	1.28
353066--353128	23	2.7	22	79	16	65	73	1	11	14	1.18
353052--353104	19	2.7	19	78	16	56	77	1	7	13	1.06
354265--354298	3	11.3	3	87	12	52	67	0	0	32	0.91
354261--354312	13	3.9	14	82	14	65	63	0	1	34	1.06
354261--354293	16	2.1	16	100	0	66	69	0	0	30	0.88
354326--354378	27	1.9	28	92	3	90	45	3	0	50	1.19
354370--354545	33	5.3	31	75	19	128	45	4	3	46	1.42
354356--354545	31	5.5	34	75	19	132	45	4	3	46	1.42
354354--354649	36	8.8	31	73	19	147	45	6	3	44	1.46
354354--354551	34	5.8	35	75	18	161	45	4	3	45	1.40
354528--354578	28	1.9	26	88	11	77	47	5	3	43	1.46
354445--354614	64	2.7	58	82	11	162	44	6	4	45	1.48
365103--365148	22	2.1	22	88	8	67	41	4	17	36	1.69
366725--366849	47	2.8	45	85	6	162	31	23	8	37	1.84
366956--367084	59	2.2	59	87	0	177	28	24	17	28	1.98
374197--374321	47	2.8	45	83	6	153	29	22	9	38	1.86
374430--374558	59	2.2	59	88	0	186	28	25	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376602--376626	12	2.1	12	100	0	50	28	16	32	24	1.96
378658--378712	23	2.5	23	82	5	78	27	16	20	36	1.93
383874--383969	48	2.0	48	100	0	192	27	22	12	37	1.90
384129--384180	10	5.4	9	82	11	50	7	7	0	84	0.77
384129--384173	10	4.5	10	83	10	56	6	6	0	86	0.70
384148--384180	9	3.6	9	92	8	57	9	12	0	78	0.95
385906--385962	20	2.8	20	97	0	105	38	15	17	28	1.91
387605--387672	19	3.2	19	67	25	55	32	5	10	51	1.60
387587--387672	45	1.9	45	97	0	163	36	4	9	50	1.56
387838--387911	29	2.6	29	80	0	85	41	21	16	20	1.90
387968--388111	75	1.9	75	97	0	270	48	14	13	22	1.79
390431--390535	19	5.2	19	82	13	120	34	5	28	31	1.81
390958--391070	20	5.7	20	69	15	72	23	19	27	29	1.98
390958--391090	40	3.3	39	68	13	99	24	19	25	30	1.98
394430--394612	30	6.1	30	74	7	129	60	10	11	17	1.59
394475--394632	30	5.2	30	75	4	111	60	9	12	17	1.57
395930--396008	3	26.7	3	81	12	92	65	1	1	31	1.08
396260--396500	131	1.8	131	82	0	311	25	14	31	28	1.95
396506--396681	66	2.6	66	81	7	196	39	14	21	25	1.91
396579--396759	99	1.9	97	86	5	258	40	14	19	25	1.89
396636--396712	31	2.5	31	91	0	118	38	11	16	32	1.85
396599--396830	99	2.3	98	80	7	247	38	13	18	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400441--400503	21	2.9	21	78	4	63	31	26	19	22	1.97
400438--400506	23	3.1	23	77	6	79	34	24	18	21	1.96
416667--416728	32	1.9	32	90	0	97	56	11	16	16	1.67
418544--418698	60	2.6	61	79	9	174	57	11	12	18	1.65
418544--418730	30	6.3	30	73	4	137	58	12	12	16	1.64
420052--420099	18	2.7	18	93	3	80	66	4	0	29	1.10
420051--420079	15	1.9	15	100	0	58	68	3	0	27	1.05
421167--421472	44	6.9	43	72	13	201	45	7	21	25	1.78
421326--421527	52	4.1	52	74	15	201	46	6	22	24	1.76
421337--421522	94	2.0	94	91	4	293	44	7	23	24	1.79

Tables:   1   2   3   4   5   6