genome.fa.s8785.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008785.1 Hibiscus syriacus cultivar Beakdansim tig00111917_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1341157

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 675 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665799--665872	32	2.3	32	83	0	85	32	13	24	29	1.93
666019--666215	83	2.3	83	83	5	227	32	23	19	24	1.97
666968--667277	159	1.9	159	94	0	539	33	26	13	26	1.93
667177--667351	61	2.9	62	67	5	149	32	25	15	26	1.96
667095--667538	220	2.0	220	84	0	575	33	25	14	26	1.94
667477--667667	104	1.8	104	84	2	258	34	25	15	24	1.94
670239--670291	26	2.0	27	85	3	72	11	15	5	67	1.38
682517--682557	2	20.5	2	100	0	82	51	0	0	48	1.00
682891--682937	24	2.0	24	84	12	62	42	0	0	57	0.98
685457--685686	21	11.0	21	74	11	170	21	20	23	34	1.96
685472--685574	40	2.4	43	88	9	158	19	21	25	33	1.97
685463--685630	65	2.7	63	90	3	250	20	19	24	35	1.95
685562--685683	42	2.9	42	93	0	208	20	18	23	36	1.95
685456--685686	107	2.2	105	87	7	346	21	19	23	34	1.96
685775--685852	6	13.0	6	98	0	120	33	50	5	11	1.61
686355--686402	6	8.5	6	95	2	66	2	16	54	27	1.54
686474--686530	21	2.9	19	70	10	60	36	22	21	19	1.95
692745--692799	24	2.3	24	96	0	101	27	18	25	29	1.98
697139--697258	62	1.9	63	91	5	199	25	8	16	50	1.73
700069--700099	14	2.2	14	94	0	53	29	12	12	45	1.80
705110--705225	29	3.9	30	78	9	87	34	9	3	52	1.51
705067--705424	30	12.2	29	73	10	212	36	9	1	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705327--705386	24	2.5	24	83	5	68	36	8	1	53	1.41
705450--705537	29	3.0	30	80	5	99	51	1	5	42	1.33
705824--705857	16	2.1	16	88	0	50	70	0	0	29	0.87
707135--707224	41	2.2	41	86	7	123	25	13	13	47	1.79
707135--707235	40	2.6	38	84	10	125	25	12	12	48	1.77
710239--710266	14	2.0	14	100	0	56	50	7	0	42	1.30
710732--710789	26	2.2	26	100	0	116	12	15	15	56	1.67
717155--717201	15	3.1	15	75	19	53	38	2	0	59	1.09
717158--717206	14	3.4	14	84	13	64	34	2	0	63	1.06
717128--717206	29	2.7	30	80	7	90	37	1	0	60	1.05
717210--717243	16	2.1	16	100	0	68	50	0	0	50	1.00
717866--717892	12	2.2	12	100	0	54	51	0	0	48	1.00
718442--718500	29	2.0	29	86	0	82	40	22	6	30	1.79
719079--719112	17	2.1	16	94	5	59	58	0	0	41	0.98
719079--719112	16	2.1	17	88	5	52	58	0	0	41	0.98
720876--720919	6	7.3	6	97	0	79	36	2	0	61	1.09
725326--725376	19	2.7	19	77	14	61	43	5	1	49	1.38
725400--725642	22	11.0	22	75	13	198	41	10	3	44	1.56
725400--725651	89	2.8	89	89	5	359	40	10	3	45	1.56
726088--726151	21	3.0	21	97	0	119	28	26	20	25	1.99
732091--732158	24	2.8	24	79	0	82	23	14	27	33	1.94
733509--733604	31	3.1	31	87	3	131	32	25	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734476--734556	24	3.5	24	91	6	125	24	22	20	32	1.98
734544--734684	64	2.2	63	82	7	169	25	24	17	32	1.97
735157--735194	19	2.0	20	89	5	60	52	5	34	7	1.53
754754--754827	37	2.0	37	94	0	130	25	41	4	28	1.73
754754--754847	37	2.5	37	87	3	107	27	40	4	27	1.75
754875--754937	12	5.2	12	80	0	63	34	42	7	14	1.75
758923--758977	20	2.6	21	80	5	58	43	5	1	49	1.36
759025--759144	20	5.7	20	76	14	82	41	5	4	49	1.44
758995--759198	45	4.6	45	79	8	197	42	5	3	48	1.44
758995--759215	65	3.4	64	79	11	213	42	5	3	48	1.42
759001--759204	87	2.3	88	85	5	254	42	5	3	48	1.44
760487--760522	2	18.0	2	100	0	72	50	0	0	50	1.00
761037--761242	100	2.0	102	96	3	380	32	19	16	32	1.94
762511--762543	2	16.5	2	100	0	66	51	0	0	48	1.00
775025--775132	43	2.5	43	92	0	171	29	20	25	24	1.99
789095--789204	37	3.1	37	77	13	106	41	9	2	46	1.50
789381--789423	3	14.7	3	95	4	79	34	0	0	65	0.93
789480--789632	71	2.1	72	82	1	191	35	20	23	20	1.96
789593--789668	29	2.6	29	87	4	100	38	15	21	25	1.92
792546--792586	15	2.7	15	84	0	55	51	0	12	36	1.40
796008--796061	24	2.2	24	93	0	99	35	5	7	51	1.53
811461--811503	20	2.1	21	87	8	63	18	13	0	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
811460--811509	20	2.5	20	75	15	59	18	18	0	64	1.30
822584--822636	27	2.0	27	96	0	97	32	18	18	30	1.96
823983--824031	23	2.3	21	77	16	55	44	0	0	55	0.99
825042--825124	6	13.3	6	79	11	60	21	2	2	73	1.06
825077--825145	3	23.0	3	89	5	95	34	0	0	65	0.93
828347--828416	36	1.9	36	85	0	95	42	20	12	24	1.86
828810--828897	43	2.0	44	88	2	133	30	12	23	32	1.92
828974--829002	7	4.3	7	91	8	51	13	13	10	62	1.55
828972--829002	13	2.4	13	94	0	53	16	16	9	58	1.63
837146--837202	22	2.6	23	88	8	91	33	15	14	36	1.88
837902--838429	113	4.7	113	91	2	830	36	14	20	28	1.92
838843--838896	3	19.0	3	88	7	78	33	0	0	66	0.92
838813--838892	27	3.1	26	79	13	76	25	0	3	71	1.03
850161--850385	29	7.0	31	65	26	98	16	9	32	41	1.80
850193--850300	55	2.0	54	96	1	198	21	8	25	44	1.80
850267--850385	39	3.2	37	86	5	168	12	10	37	39	1.77
850398--850528	39	3.4	39	95	2	228	3	19	42	34	1.67
850637--850677	20	2.0	20	95	0	73	53	12	9	24	1.68
862580--862615	15	2.4	15	90	0	54	27	0	13	58	1.36
873857--873881	2	12.5	2	100	0	50	0	48	0	52	1.00
873881--873906	2	13.0	2	100	0	52	50	0	0	50	1.00
880103--880157	27	1.9	29	85	10	78	32	16	12	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
880382--880451	2	35.0	2	100	0	140	50	0	0	50	1.00
880928--880960	2	16.5	2	93	0	57	48	0	0	51	1.00
882634--882675	22	1.9	22	85	9	59	38	2	7	52	1.42
882627--882672	14	3.2	14	87	3	56	36	2	6	54	1.39
887361--887395	15	2.2	16	90	5	54	45	2	0	51	1.16
887387--887431	20	2.2	21	88	4	65	46	0	0	53	1.00
889318--889409	23	4.0	22	71	10	60	76	1	9	13	1.08
889348--889453	9	11.8	9	69	15	51	71	2	6	18	1.20
889442--889474	15	2.2	15	89	10	50	81	0	9	9	0.87
889785--889820	3	12.3	3	88	5	56	63	2	0	33	1.08
889790--889823	11	3.0	11	95	4	59	64	0	0	35	0.94
889899--889937	13	3.3	12	89	10	55	74	0	7	17	1.05
890073--890120	25	2.0	24	83	4	60	68	2	6	22	1.23
892255--892398	54	2.7	53	86	4	175	25	16	22	35	1.95
893418--893643	94	2.6	87	84	11	257	30	21	20	27	1.98
894452--894515	23	2.8	23	82	0	92	32	26	25	15	1.95
895985--896024	20	2.0	21	85	5	55	42	10	10	37	1.72
896081--896144	20	2.9	22	81	11	69	23	25	18	32	1.97
896626--896673	21	2.3	21	100	0	96	29	8	14	47	1.73
901060--901123	20	2.9	22	81	11	69	23	25	18	32	1.97
904242--904448	77	2.7	77	87	5	285	19	23	33	23	1.97
905058--905101	17	2.6	17	85	7	63	56	29	0	13	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905053--905103	9	6.2	8	78	17	52	58	27	0	13	1.36
907030--907069	21	1.9	21	89	0	62	10	25	40	25	1.86
907050--907112	20	2.9	21	79	9	65	15	25	34	23	1.95
912878--913086	77	2.8	77	87	2	289	20	23	31	24	1.98
915317--915450	9	14.4	9	67	16	51	73	1	10	14	1.15
915332--915385	21	2.5	21	85	11	65	77	1	9	11	1.06
915352--915450	9	10.2	9	69	18	56	75	1	8	15	1.08
915352--915412	28	2.1	27	82	14	70	77	0	8	14	0.99
915375--915526	9	16.4	9	68	16	53	73	3	6	16	1.20
915993--916107	43	2.7	40	78	12	131	61	2	7	27	1.37

Tables:   1   2   3   4   5   6