genome.fa.s8785.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008785.1 Hibiscus syriacus cultivar Beakdansim tig00111917_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1341157

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 675 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1142036--1142209	31	5.6	31	97	0	321	18	18	22	39	1.93
1146618--1146772	31	5.0	31	95	2	260	20	19	22	38	1.94
1153260--1153319	26	2.3	26	88	0	84	31	20	23	25	1.98
1153639--1153701	32	2.0	32	87	0	90	30	26	9	33	1.88
1154632--1154663	15	2.1	15	94	0	55	31	25	9	34	1.87
1156039--1156069	14	2.2	14	100	0	62	48	9	12	29	1.73
1158295--1158344	20	2.5	20	87	3	66	32	20	12	36	1.89
1171543--1171596	20	2.7	20	94	0	99	25	14	35	24	1.94
1202409--1202435	14	1.9	14	100	0	54	40	22	22	14	1.90
1204093--1204124	7	4.6	7	96	0	55	53	0	0	46	1.00
1205340--1205396	27	2.2	26	84	9	71	49	3	0	47	1.18
1208627--1208658	6	5.3	6	100	0	64	15	50	0	34	1.45
1211821--1211863	14	3.1	14	86	6	52	67	2	0	30	1.03
1211876--1211906	2	15.5	2	100	0	62	51	0	0	48	1.00
1212873--1212936	32	2.0	32	96	0	119	39	6	39	15	1.73
1214404--1214456	23	2.3	23	90	0	79	35	24	22	16	1.95
1214412--1214464	23	2.3	23	93	0	88	30	28	24	16	1.97
1222002--1222137	64	2.2	64	81	7	154	25	18	21	34	1.96
1227529--1227557	15	2.0	15	93	6	51	51	6	6	34	1.55
1228087--1228126	2	20.0	2	100	0	80	50	0	0	50	1.00
1228179--1228261	15	5.6	15	72	21	59	65	0	9	25	1.23
1228192--1228261	29	2.4	29	81	9	79	67	0	10	22	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1228923--1228961	19	2.1	19	95	0	69	23	12	46	17	1.83
1229407--1230130	136	5.3	137	91	1	1042	26	15	24	33	1.95
1230295--1230325	14	2.2	14	100	0	62	12	35	12	38	1.82
1240787--1240819	17	1.9	17	100	0	66	42	21	30	6	1.77
1241261--1241290	13	2.3	13	94	0	51	46	10	0	43	1.37
1241910--1241988	15	5.3	14	73	14	61	68	0	6	25	1.13
1241910--1241970	24	2.6	24	73	2	61	67	0	6	26	1.15
1241980--1242028	26	1.9	26	87	4	73	61	4	10	24	1.45
1244886--1244920	2	18.0	2	94	5	63	48	0	0	51	1.00
1244939--1245011	36	2.0	36	86	5	103	47	4	1	46	1.30
1258100--1258129	15	2.1	15	93	6	53	6	0	26	66	1.16
1258428--1258465	12	2.9	14	80	15	53	44	7	5	42	1.56
1258567--1258612	19	2.6	18	83	10	58	43	6	2	47	1.41
1262844--1262894	24	2.0	24	85	7	66	43	1	7	47	1.43
1264403--1264653	43	5.9	43	79	6	289	26	19	22	31	1.98
1264392--1264653	84	3.1	85	83	6	343	27	20	21	30	1.98
1265111--1265158	21	2.3	21	81	0	60	2	37	12	47	1.53
1268048--1268084	18	2.1	17	95	5	65	70	16	5	8	1.30
1268393--1268479	39	2.2	39	97	0	165	35	10	8	45	1.68
1271518--1271565	22	2.1	23	88	11	73	35	16	6	41	1.74
1273412--1273448	18	2.1	18	89	0	56	67	10	2	18	1.32
1276397--1277241	82	10.3	82	88	1	1212	36	9	21	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1276397--1277241	245	3.4	246	88	0	1266	36	9	21	31	1.86
1277237--1277352	46	2.5	46	88	0	178	40	10	22	26	1.86
1282567--1282613	17	2.8	17	86	0	67	29	36	17	17	1.92
1282583--1282723	64	2.2	64	83	8	173	31	24	18	25	1.98
1282695--1282743	19	2.6	19	84	9	57	24	28	20	26	1.99
1282583--1282743	64	2.5	62	76	16	150	29	25	18	26	1.98
1290150--1290193	21	2.1	21	86	0	61	6	43	15	34	1.74
1292129--1292166	19	2.0	19	100	0	76	42	0	21	36	1.53
1292596--1292628	17	1.9	17	93	0	57	27	39	18	15	1.90
1293594--1293639	17	2.6	18	96	3	85	26	13	34	26	1.92
1294826--1295016	55	3.5	54	89	3	267	34	19	11	34	1.88
1295372--1295423	22	2.6	19	84	9	68	28	17	17	36	1.92
1296311--1297131	82	10.1	82	92	2	1285	35	10	21	31	1.88
1296311--1297131	245	3.4	245	92	1	1324	35	10	21	31	1.88
1297127--1297255	46	2.8	46	87	0	177	47	9	17	25	1.78
1300967--1300997	16	1.9	16	93	0	53	25	0	6	67	1.14
1301702--1301767	3	22.0	3	100	0	132	33	0	33	33	1.58
1303797--1303825	14	2.1	14	100	0	58	20	13	0	65	1.26
1303840--1303882	22	2.0	21	86	13	61	53	0	4	41	1.21
1304520--1304573	22	2.5	22	81	0	63	7	29	5	57	1.49
1307816--1307875	20	3.0	20	95	2	102	25	18	21	35	1.96
1310874--1310964	22	4.4	22	66	13	66	45	0	5	49	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1310885--1310912	13	2.2	13	100	0	56	39	0	7	53	1.28
1310919--1310945	11	2.5	11	100	0	54	51	0	7	40	1.30
1311063--1311152	43	2.1	43	91	0	144	43	1	1	54	1.14
1311239--1311302	22	3.0	20	80	11	56	43	0	1	54	1.09
1325824--1325970	73	2.0	73	89	0	222	25	10	25	37	1.89
1327955--1328015	23	2.7	23	86	0	95	26	26	27	19	1.99
1328317--1328363	24	1.9	25	86	4	69	40	14	10	34	1.81
1333586--1333669	23	3.7	23	90	0	123	28	28	25	17	1.98
1337595--1338101	7	74.7	7	90	9	797	42	0	0	57	0.98

Tables:   1   2   3   4   5   6

The End!