genome.fa.s8793.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008793.1 Hibiscus syriacus cultivar Beakdansim tig00111937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  720278

Tables:   1   2   3   4   

This is table  1  of  4  ( 413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2773--2807	19	1.9	19	88	11	56	71	11	5	11	1.30
6559--6616	10	5.7	10	82	10	64	82	12	5	0	0.82
6559--6624	20	3.3	20	80	0	78	80	13	6	0	0.89
6560--6616	12	4.3	12	74	25	53	84	10	5	0	0.77
6823--6856	15	2.3	15	89	0	50	44	5	8	41	1.60
21052--21086	12	2.9	12	91	8	54	65	0	11	22	1.24
21607--21637	16	1.9	16	93	0	53	74	0	12	12	1.08
21739--21776	20	1.9	20	88	0	58	52	7	5	34	1.53
23703--23782	34	2.4	34	91	0	124	30	17	10	42	1.82
24202--24286	12	6.7	12	71	12	53	76	5	4	12	1.13
24202--24256	6	9.0	6	76	4	56	76	3	3	16	1.07
24691--24721	12	2.5	13	94	5	55	64	0	9	25	1.24
29045--29142	48	2.0	48	100	0	196	36	16	16	30	1.91
29981--30043	13	4.5	14	74	20	60	73	0	3	23	0.98
29994--30043	13	3.5	15	79	17	61	74	0	4	22	0.99
30121--30206	14	6.1	14	75	12	63	76	0	6	16	0.99
30072--30205	39	3.5	37	76	13	105	73	0	6	18	1.09
30106--30205	6	15.8	6	72	13	51	75	0	7	18	1.03
31369--31393	13	1.9	13	100	0	50	80	0	0	20	0.72
31434--31475	15	2.6	16	81	7	50	52	0	0	47	1.00
31473--31538	29	2.3	29	86	0	87	40	4	4	50	1.43
31504--31798	39	8.2	37	75	16	225	44	5	4	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31607--31801	39	5.2	38	85	7	240	44	5	3	46	1.44
31504--31752	139	1.8	137	86	6	369	44	6	4	45	1.48
31782--31816	2	18.0	2	94	5	63	51	0	0	48	1.00
32344--33593	84	15.0	84	82	4	1352	25	19	24	31	1.98
32392--33593	249	4.8	247	86	2	1343	25	19	24	30	1.98
37430--37464	15	2.3	16	90	9	56	68	0	5	25	1.11
37423--37463	16	2.6	16	85	11	50	70	0	4	24	1.06
37422--37492	12	5.6	12	74	15	54	73	1	4	21	1.08
37582--37631	13	3.6	14	71	12	50	74	0	6	20	1.03
39017--39085	4	18.0	4	91	8	117	76	0	0	23	0.78
39016--39085	30	2.3	31	97	2	133	77	0	0	22	0.78
39018--39085	34	2.1	31	91	8	109	76	0	0	23	0.79
39120--39224	14	7.7	14	65	23	55	44	2	2	49	1.31
39095--39193	37	2.6	36	82	7	117	48	5	1	45	1.31
39157--39256	29	3.3	29	76	16	103	43	5	5	47	1.47
39122--39256	63	2.1	64	86	4	182	44	3	3	48	1.38
39121--39257	65	2.1	67	82	8	174	44	3	3	48	1.38
39108--39476	138	2.6	135	74	9	316	44	5	4	46	1.45
39290--39486	39	5.2	37	81	8	209	44	6	4	45	1.47
39188--39415	75	3.2	67	79	11	199	44	5	4	45	1.47
45261--45326	30	2.2	30	86	0	87	12	28	22	36	1.90
48047--48110	32	2.0	32	100	0	128	15	25	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52205--52246	22	2.0	21	85	4	57	42	19	19	19	1.89
53034--53103	34	2.1	34	97	0	131	47	5	10	37	1.61
54779--54907	57	2.3	55	85	7	172	60	5	12	21	1.52
54799--54909	57	1.9	57	96	0	204	62	4	12	20	1.48
55349--55489	65	2.2	65	86	7	198	36	21	12	29	1.90
61311--61408	21	4.6	21	74	13	85	26	20	18	34	1.95
61885--61917	12	2.6	13	90	4	50	36	12	6	45	1.66
63967--64089	65	1.9	65	84	3	167	30	23	18	27	1.98
66826--66910	34	2.5	34	92	0	143	58	0	1	40	1.05
70638--71019	156	2.4	155	81	5	378	46	6	16	31	1.71
70680--71041	156	2.3	155	82	4	417	47	5	17	29	1.70
75393--75437	23	2.0	23	86	0	63	35	24	17	22	1.95
82106--82190	24	3.6	24	72	15	70	31	22	22	23	1.98
82161--82205	23	2.0	23	81	0	54	28	26	22	22	1.99
85021--85128	37	2.9	36	78	5	117	40	13	12	32	1.83
89345--89458	44	2.6	44	87	8	169	70	11	14	4	1.31
89370--89444	22	3.2	25	66	23	72	70	12	12	5	1.31
90074--90137	21	3.0	22	88	4	103	39	25	14	21	1.91
90073--90141	22	3.2	22	87	4	113	37	23	14	24	1.92
90874--92125	106	11.9	106	91	1	1932	34	25	18	22	1.96
92265--92311	21	2.2	21	96	0	85	29	17	21	31	1.96
92873--92977	37	2.8	37	83	0	129	40	15	12	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95478--95697	41	5.6	37	78	14	144	44	1	8	45	1.43
95468--95538	37	1.9	36	83	8	90	45	1	8	45	1.42
95476--95564	39	2.4	35	78	15	90	47	2	8	41	1.47
95545--95698	41	3.9	38	85	9	177	42	0	7	49	1.36
95598--95775	36	5.2	35	74	14	140	43	1	8	46	1.42
95660--95713	28	1.9	28	96	0	99	44	0	5	50	1.25
95624--95757	64	2.2	59	86	10	180	44	0	7	47	1.36
95661--95721	28	2.4	24	86	10	77	45	0	6	47	1.28
95545--95775	36	6.5	35	75	16	131	43	1	7	47	1.40
95585--95775	100	1.9	103	84	7	266	42	1	8	47	1.40
95584--95803	100	2.2	102	82	9	265	43	0	8	47	1.39
96230--96289	23	2.6	23	89	0	93	46	26	13	13	1.80
96575--96780	64	3.2	64	79	10	206	30	24	16	28	1.96
103676--103873	64	3.1	63	84	6	238	31	24	16	27	1.97
103932--103990	8	7.9	8	74	14	54	23	25	20	30	1.98
103933--103990	22	2.6	22	100	0	116	24	25	18	31	1.98
105565--105597	14	2.4	14	94	0	57	24	0	0	75	0.80
105565--105603	18	2.2	18	90	0	60	25	0	0	74	0.82
105542--105603	14	4.3	14	76	11	54	27	1	0	70	0.96
106370--106422	3	18.0	3	88	11	83	66	0	1	32	1.03
107605--107638	11	3.1	11	82	0	50	26	0	47	26	1.53
107702--107745	15	2.8	16	86	3	54	70	0	2	27	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113183--113232	3	17.3	3	79	8	59	32	2	2	64	1.16
114819--114869	5	9.8	5	89	2	57	13	3	5	76	1.11
115169--115600	214	2.0	214	98	0	828	31	17	15	35	1.92
122195--122220	11	2.4	11	100	0	52	38	0	0	61	0.96
122659--122754	2	52.5	2	67	17	57	50	0	0	50	1.00
122938--122987	2	25.0	2	100	0	100	50	0	0	50	1.00
123808--123837	15	1.9	16	93	6	53	43	3	0	53	1.17
124771--124812	22	1.9	21	85	9	57	71	2	4	21	1.16
129157--129204	21	2.3	21	96	0	87	39	33	4	22	1.74
131970--132002	16	2.1	16	88	11	50	48	0	12	39	1.40
134889--134969	15	5.5	15	70	5	58	43	3	3	49	1.38
135672--135713	19	2.2	20	86	4	59	76	2	2	19	1.01
139480--139722	61	4.0	62	81	9	279	31	12	22	32	1.92
139480--139744	122	2.2	122	85	6	351	32	13	21	32	1.93
145759--146030	105	2.6	105	85	5	352	25	20	14	38	1.91
146024--146097	20	3.6	21	65	27	52	22	20	9	47	1.79
146004--146102	39	2.5	39	93	0	171	25	20	11	43	1.84
148122--148164	20	2.2	20	91	0	68	34	20	11	32	1.89
154703--154763	20	3.1	20	71	17	56	72	0	3	24	1.00
157085--157319	52	4.4	52	80	7	231	40	17	8	32	1.81
157347--157429	36	2.2	35	81	12	94	36	15	21	26	1.94
157373--157479	51	2.1	51	92	0	178	35	14	25	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157409--157449	15	2.7	15	92	0	64	34	17	31	17	1.93
157404--157479	15	4.7	15	70	17	53	32	13	26	27	1.93
157424--157516	36	2.6	36	89	1	141	36	15	23	24	1.93
157497--157535	15	2.6	15	91	0	60	30	15	33	20	1.94
157512--157621	36	3.0	36	88	6	159	34	12	24	28	1.92
157724--158096	101	3.7	103	86	4	459	37	9	19	34	1.83
157819--157990	37	4.8	37	71	15	146	41	8	17	33	1.79
157837--157963	66	1.9	67	85	4	177	42	7	17	33	1.76
158024--158084	19	3.3	19	70	21	56	45	8	18	27	1.77
171266--171290	6	4.2	6	100	0	50	0	16	48	36	1.46

Tables:   1   2   3   4