genome.fa.s8793.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008793.1 Hibiscus syriacus cultivar Beakdansim tig00111937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  720278

Tables:   1   2   3   4   

This is table  4  of  4  ( 413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618948--618977	6	4.8	6	95	4	51	50	0	0	50	1.00
620404--620493	12	7.4	12	74	16	71	56	2	2	38	1.24
626698--626738	8	5.2	8	82	5	57	34	0	29	36	1.58
626811--627558	128	5.9	128	94	2	1235	23	24	19	32	1.98
626811--627554	377	2.0	379	93	2	1273	22	24	19	32	1.98
627955--628054	33	3.0	34	83	2	139	39	3	4	54	1.35
628574--628667	21	4.5	21	89	5	136	21	27	32	18	1.96
628671--628718	21	2.3	21	85	0	60	22	12	39	25	1.89
630417--630486	22	3.0	22	70	17	54	58	2	0	38	1.13
630455--630522	17	3.8	19	73	22	58	61	1	0	36	1.05
630480--630522	23	2.0	20	86	13	59	67	0	0	32	0.91
630455--630514	18	3.4	18	72	22	56	58	1	0	40	1.08
630461--630537	34	2.3	34	84	6	95	64	3	0	31	1.11
635846--635889	21	2.2	20	87	4	61	31	27	25	15	1.96
636467--636501	18	1.9	18	88	11	54	54	5	17	22	1.64
637318--637610	149	2.0	149	95	0	532	29	16	19	34	1.94
637591--637635	23	2.0	23	81	0	54	20	24	31	24	1.98
640833--640877	21	2.1	21	87	0	63	31	28	24	15	1.96
642281--642584	149	2.0	149	95	0	554	27	17	19	34	1.95
642563--642607	23	2.0	23	86	0	63	20	24	28	26	1.99
658516--659095	284	2.0	286	96	2	1096	30	11	20	37	1.88
659757--659802	23	1.9	24	82	8	58	39	6	8	45	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660158--660231	2	39.0	2	86	10	111	47	1	0	51	1.09
661574--661610	2	19.0	2	94	5	67	48	0	0	51	1.00
662418--662505	44	2.0	46	95	4	162	32	9	15	42	1.79
668334--668383	23	2.2	23	82	7	57	38	8	16	38	1.78
668234--668486	87	2.9	86	85	4	330	44	11	10	33	1.75
669127--669170	23	1.9	23	85	0	61	40	9	13	36	1.76
669065--669263	87	2.3	87	91	0	308	45	12	10	32	1.75
669985--670034	23	2.2	23	85	0	64	40	14	16	30	1.87
669985--670041	23	2.5	23	79	0	60	43	12	14	29	1.81
670771--670820	23	2.2	23	85	0	64	40	14	16	30	1.87
670771--670827	23	2.5	23	79	0	60	43	12	14	29	1.81
669152--672025	787	3.6	789	92	3	4469	42	11	10	35	1.76
671511--671717	87	2.4	87	83	1	245	42	10	13	33	1.79
671902--672255	112	3.2	112	93	0	600	43	12	11	31	1.79
672571--672777	87	2.4	87	91	1	335	42	9	15	32	1.80
672712--672761	23	2.2	23	88	0	73	38	10	18	34	1.84
672722--672771	23	2.2	23	81	0	55	38	8	24	30	1.84
673018--673501	113	4.2	112	79	13	511	44	11	11	32	1.76
677686--677719	2	17.0	2	100	0	68	50	0	0	50	1.00
687127--687165	20	2.0	20	90	10	62	28	5	10	56	1.54
692304--693046	343	2.2	347	85	4	1022	34	17	14	32	1.91
695141--695205	19	3.2	19	68	19	58	53	26	1	18	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695118--695227	43	2.6	43	94	0	193	53	26	1	18	1.54
695118--695196	24	3.5	24	71	16	78	53	27	1	17	1.52
695673--695701	13	2.2	13	100	0	58	86	0	6	6	0.72
696531--696577	13	3.5	13	82	8	51	8	14	0	76	1.01
698323--698367	23	2.0	23	86	0	63	26	2	4	66	1.22
709302--709347	18	2.6	18	92	0	74	47	13	6	32	1.68
709381--709444	17	3.8	17	80	0	65	40	15	14	29	1.86
710780--710826	24	2.0	24	83	8	60	57	12	2	27	1.47
714107--714150	20	2.2	20	84	4	63	65	2	15	15	1.36

Tables:   1   2   3   4

The End!