genome.fa.s8793.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008793.1 Hibiscus syriacus cultivar Beakdansim tig00111937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  720278

Tables:   1   2   3   4   

This is table  2  of  4  ( 413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171878--171974	20	4.8	20	70	7	61	38	21	10	29	1.87
172889--172937	19	2.6	19	86	0	62	53	0	0	46	1.00
175720--175787	28	2.4	28	100	0	136	45	11	17	25	1.82
182848--182900	27	2.0	27	100	0	106	41	11	1	45	1.51
183267--183314	18	2.7	18	80	9	62	41	0	4	54	1.20
183366--183407	22	2.0	22	85	4	59	66	0	4	28	1.12
185298--185559	87	3.0	84	85	6	346	35	14	17	33	1.89
186251--186296	22	2.0	23	87	4	67	26	8	0	65	1.21
195127--195151	6	4.2	6	100	0	50	48	16	36	0	1.46
195286--195838	54	10.3	54	87	3	803	33	16	19	30	1.94
202469--202956	54	9.1	54	85	3	592	34	16	18	30	1.93
202469--202956	162	3.0	162	87	3	659	34	16	18	30	1.93
204647--204685	18	2.2	17	90	4	60	79	0	15	5	0.90
208720--208767	19	2.5	19	96	0	87	37	25	4	33	1.75
209553--209591	20	1.9	21	89	5	62	17	15	15	51	1.77
209431--209987	182	3.1	182	92	1	913	27	16	13	42	1.86
214741--214788	18	2.7	17	78	9	51	60	2	2	35	1.20
214815--214864	18	2.7	18	78	3	55	68	0	4	28	1.08
215481--215820	169	2.0	165	84	3	448	41	15	11	31	1.83
215918--215968	25	1.9	27	88	11	79	39	21	3	35	1.72
215787--216422	262	2.4	261	89	3	965	41	19	14	24	1.89
219978--220011	2	17.0	2	100	0	68	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224266--224335	18	4.0	17	80	9	79	37	8	15	38	1.78
224266--224335	35	2.0	35	86	5	97	37	8	15	38	1.78
224435--224473	20	2.0	20	89	0	60	41	20	7	30	1.80
239984--240038	3	18.3	3	79	20	62	34	0	0	65	0.93
239985--240046	12	5.7	11	78	21	69	37	0	0	62	0.95
239984--240046	15	4.2	15	97	0	108	36	0	0	63	0.95
240302--240329	2	14.0	2	100	0	56	50	0	0	50	1.00
250928--250961	10	3.3	10	88	8	50	85	0	14	0	0.60
250929--250956	11	2.5	11	100	0	56	92	0	7	0	0.37
251791--252566	105	7.4	105	93	1	1268	34	24	18	22	1.96
254189--254226	2	19.0	2	94	0	67	47	0	2	50	1.15
254419--254464	12	3.7	12	83	16	58	39	0	0	60	0.97
254418--254462	17	2.8	16	90	6	65	37	0	0	62	0.96
254713--254774	2	32.0	2	87	6	83	43	0	0	56	0.99
254713--254774	19	3.1	21	86	11	94	43	0	0	56	0.99
254911--254965	15	3.8	15	66	9	51	12	10	1	74	1.15
258363--258412	17	2.9	17	78	0	55	44	8	12	36	1.71
262955--262988	15	2.2	16	89	5	52	61	26	0	11	1.30
264542--264591	17	2.9	17	84	0	64	42	4	14	40	1.64
269663--269821	51	3.1	50	77	17	132	49	3	0	47	1.22
269733--269778	21	2.1	23	84	8	60	43	4	0	52	1.21
269926--269993	26	2.7	25	82	13	70	47	1	1	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269925--269970	23	2.0	23	84	12	60	47	0	2	50	1.13
270668--270710	7	6.1	7	100	0	86	41	30	0	27	1.56
271415--271471	11	4.8	12	75	20	50	78	1	7	12	1.01
272732--273163	37	10.9	37	77	17	322	45	6	1	46	1.38
272839--272890	27	1.9	27	88	7	79	48	3	0	48	1.20
272904--272933	2	15.5	2	93	6	53	46	0	0	53	1.00
272906--272931	13	2.0	13	100	0	52	46	0	0	53	1.00
272904--272933	15	2.0	15	100	0	60	46	0	0	53	1.00
272919--273172	78	3.2	76	85	7	321	42	6	2	48	1.44
282036--282080	23	2.0	23	82	8	56	31	20	22	26	1.98
282875--282936	28	2.2	27	83	8	79	16	17	29	37	1.92
282911--282954	18	2.4	18	84	0	61	13	18	34	34	1.90
291189--291232	18	2.4	18	92	0	70	13	20	36	29	1.91
293782--293821	9	4.6	9	87	12	57	90	0	0	10	0.47
293787--293821	17	2.1	16	94	5	61	91	0	0	8	0.42
293784--293849	8	7.4	9	78	21	52	78	1	0	19	0.82
293792--293842	17	2.6	20	85	14	63	80	0	0	19	0.71
293854--293946	11	7.9	11	70	13	51	45	5	1	48	1.32
293860--293963	35	2.9	35	87	5	138	45	5	0	49	1.26
303258--303359	31	3.3	31	86	4	127	39	18	18	23	1.92
308261--308644	194	2.0	194	94	0	669	30	17	20	31	1.96
311164--311205	19	2.3	19	91	4	68	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313456--313549	36	2.6	36	94	0	161	19	14	21	44	1.86
313536--313588	24	2.2	24	82	0	61	22	7	11	58	1.57
313550--313613	24	2.7	24	90	0	101	17	6	10	65	1.43
313947--314008	23	2.7	23	87	2	79	12	16	16	54	1.71
318233--318323	31	2.9	31	86	0	128	28	19	18	32	1.96
336763--336996	118	2.0	117	95	2	425	30	11	17	41	1.84
337472--337581	31	3.5	31	84	0	148	22	11	13	51	1.73
345412--345534	60	2.1	59	86	4	169	37	17	13	32	1.88
347995--348159	65	2.5	66	75	11	162	49	5	4	41	1.45
348684--348730	24	2.0	24	91	0	76	46	19	27	6	1.74
348835--348883	3	16.3	3	91	8	82	36	0	0	63	0.95
350385--350475	30	3.0	30	85	6	105	20	14	4	60	1.51
350406--350500	30	3.2	30	85	5	104	21	8	7	63	1.47
350782--350815	15	2.2	16	89	5	52	17	11	0	70	1.16
354103--354216	12	9.2	13	74	13	91	77	7	14	1	1.06
354131--354198	35	2.0	35	83	13	88	75	7	14	2	1.14
354120--354177	27	2.1	28	90	3	91	75	5	17	1	1.06
354103--354225	24	5.0	24	74	12	106	76	6	15	1	1.07
355267--355329	32	2.0	32	83	0	81	30	15	25	28	1.96
355474--355661	66	2.9	62	78	13	193	26	18	15	39	1.90
355817--356165	131	2.6	131	83	7	420	26	32	17	24	1.97
357904--358018	30	3.9	30	85	4	144	17	9	7	65	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357904--358018	59	1.9	60	85	1	160	17	9	7	65	1.45
358740--358779	21	2.0	21	85	5	55	42	0	2	55	1.13
365681--365745	32	2.0	33	87	3	96	36	40	7	15	1.76
369292--369348	3	19.7	3	92	7	100	35	0	0	64	0.93
369292--369348	26	2.2	26	100	0	114	35	0	0	64	0.93
370000--370025	5	5.2	5	100	0	52	0	19	57	23	1.40
371311--371470	30	5.4	30	77	10	134	18	13	11	55	1.68
372386--372435	26	1.9	26	95	0	91	24	12	8	56	1.62
372387--372441	26	2.2	26	90	3	85	25	10	7	56	1.59
372393--372449	26	2.2	26	81	3	71	24	12	8	54	1.65
376257--376315	22	2.7	22	100	0	118	30	15	3	50	1.60
376592--376626	14	2.4	15	90	4	54	48	28	8	14	1.73
376980--377142	88	1.8	90	84	5	224	34	15	10	39	1.82
377389--377482	28	3.3	28	81	10	111	34	13	9	42	1.77
377704--377883	67	2.8	64	80	5	191	28	22	11	37	1.88
377910--377983	28	2.6	28	81	8	87	29	6	16	47	1.72
378010--378431	130	3.2	130	83	2	468	26	32	16	23	1.96
380207--380364	30	5.3	30	73	14	112	17	13	12	57	1.65
380787--380832	16	2.9	16	86	0	74	15	26	23	34	1.94
381176--381208	16	2.1	16	100	0	66	51	6	18	24	1.68
381291--381491	99	2.0	100	99	0	395	20	11	7	59	1.57
381588--381626	20	1.9	21	84	5	53	38	2	5	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382293--382357	19	3.3	19	72	20	62	23	15	1	60	1.44
383164--383545	190	2.0	189	97	1	730	27	7	14	50	1.69
383661--383701	20	2.0	20	90	0	64	36	31	12	19	1.89
387709--387740	17	1.9	16	93	6	55	68	0	3	28	1.04
391550--391749	45	4.5	43	81	5	141	20	13	19	47	1.82
391603--391749	45	3.3	45	85	4	181	20	10	19	49	1.77
403085--403298	27	8.1	27	79	5	206	14	24	0	60	1.38
403080--403272	104	1.9	104	94	2	343	16	24	0	58	1.38
403871--403905	16	2.2	16	95	5	63	34	34	14	17	1.90
415841--416111	37	7.8	37	68	15	166	31	16	9	41	1.81

Tables:   1   2   3   4