genome.fa.s8793.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008793.1 Hibiscus syriacus cultivar Beakdansim tig00111937_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  720278

Tables:   1   2   3   4   

This is table  3  of  4  ( 413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415956--416078	65	1.9	66	84	5	169	31	15	8	44	1.76
415838--416101	102	2.6	103	90	3	433	30	16	10	42	1.81
416240--416353	36	3.2	36	77	6	115	26	17	14	41	1.88
416570--416720	52	2.9	53	81	4	171	31	11	17	39	1.86
426480--426535	24	2.3	25	81	9	62	64	12	0	23	1.27
427911--427956	21	2.2	21	100	0	92	36	23	6	32	1.81
433634--433754	20	5.4	20	67	25	64	23	22	9	43	1.83
433621--433780	46	3.5	46	86	6	225	24	21	10	43	1.84
433762--434165	93	4.3	93	84	8	534	20	22	12	44	1.85
433621--434085	212	2.2	208	86	5	630	21	22	11	43	1.85
433762--434165	47	8.7	47	81	9	488	20	22	12	44	1.85
452557--452643	23	3.8	23	83	3	104	22	17	26	33	1.96
452557--452646	46	2.0	46	84	4	119	24	17	25	32	1.97
461619--461700	3	28.0	3	92	4	141	34	1	0	64	1.01
469842--469902	30	2.0	30	93	0	104	42	9	22	24	1.84
474780--474868	4	22.0	4	73	13	58	75	0	17	6	1.02
474797--474857	10	6.4	10	75	19	51	75	0	16	8	1.03
476135--476509	133	2.8	133	86	4	504	34	20	15	29	1.93
476690--476743	3	18.7	3	74	14	51	29	3	0	66	1.09
476774--476809	18	1.9	19	88	5	56	44	27	11	16	1.82
477553--477579	14	1.9	14	100	0	54	37	3	0	59	1.15
480265--480298	15	2.3	15	100	0	68	41	14	5	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483911--483952	16	2.6	16	88	7	59	45	0	9	45	1.36
484711--484777	28	2.6	26	83	9	84	34	11	5	47	1.65
486017--486048	2	16.0	2	93	0	55	46	0	0	53	1.00
487387--487451	3	22.0	3	84	3	78	63	0	0	36	0.95
487713--488285	123	4.7	123	91	2	868	25	19	14	40	1.90
488324--488450	36	3.5	36	76	2	128	40	11	18	30	1.85
489146--489202	22	2.6	22	91	0	87	35	14	15	35	1.88
489425--489843	204	2.0	208	85	5	571	32	20	13	33	1.91
489770--490095	54	6.1	53	85	2	409	27	21	13	37	1.91
489775--490095	108	3.0	108	88	4	461	27	21	13	37	1.91
495393--495470	36	2.2	36	88	0	111	57	8	14	19	1.63
495435--495474	14	2.9	14	80	0	53	62	10	12	15	1.54
495435--495536	28	3.7	28	69	12	77	57	10	13	17	1.64
495506--495543	14	2.6	15	87	4	51	60	7	15	15	1.57
498863--498900	2	19.0	2	100	0	76	50	0	0	50	1.00
498862--498916	8	6.4	9	86	14	57	52	1	1	43	1.22
500209--500258	3	17.0	3	83	4	57	60	0	2	38	1.09
500209--500267	12	5.1	12	77	6	59	59	0	1	38	1.08
501696--501738	6	7.2	6	78	0	50	6	13	25	53	1.65
501690--501724	18	1.9	18	94	0	61	14	11	20	54	1.70
501690--501743	18	3.0	18	83	0	54	14	12	20	51	1.75
501714--501748	18	1.9	18	88	0	52	8	17	25	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502570--502624	17	3.4	17	75	10	69	20	7	7	65	1.41
502570--502632	32	1.9	33	96	3	119	22	9	6	61	1.49
505279--505373	30	3.2	30	86	5	131	43	9	16	30	1.80
507239--507386	40	3.8	40	85	3	210	23	15	28	32	1.95
507491--507611	45	2.7	46	84	3	156	39	9	20	30	1.84
510015--510064	21	2.4	21	96	0	91	22	30	26	22	1.99
512841--512886	23	2.0	23	87	8	67	50	4	19	26	1.66
513087--513190	35	3.0	35	75	17	108	44	5	4	45	1.49
516918--516952	12	2.8	13	86	4	54	74	2	0	22	0.95
517376--517605	117	2.0	117	85	0	309	26	17	19	36	1.94
517534--518233	33	21.1	33	83	3	744	25	19	17	38	1.93
517534--518226	67	10.5	66	83	3	764	25	19	17	37	1.93
517534--518233	101	7.0	100	85	2	804	25	19	17	38	1.93
520359--520450	16	5.7	15	72	15	69	2	14	3	80	0.93
520360--520411	11	4.6	11	77	13	52	0	19	1	78	0.84
520359--520438	27	2.8	27	76	14	72	2	15	3	78	0.99
520414--520478	24	2.6	25	81	13	73	3	7	7	81	0.96
520691--520734	2	21.5	2	95	4	79	50	2	0	47	1.13
527226--527292	22	3.1	22	77	14	68	68	2	1	26	1.12
527243--527281	17	2.4	16	82	4	51	66	0	2	30	1.05
533353--533392	13	3.1	13	85	7	55	80	0	15	5	0.88
533465--533595	69	1.9	69	96	0	244	38	21	13	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534498--534605	32	3.4	32	88	2	146	31	13	17	37	1.89
535283--535328	20	2.3	20	92	0	74	34	26	8	30	1.86
535301--535578	105	2.6	106	87	2	389	34	24	18	22	1.96
535806--535930	65	1.9	65	83	3	162	30	19	12	38	1.88
535847--536214	102	3.7	102	83	5	365	29	19	12	37	1.89
536014--536086	37	2.0	37	83	0	92	27	21	13	36	1.92
535951--536197	102	2.5	100	89	3	367	30	19	12	36	1.89
536275--536336	21	3.2	21	63	25	55	20	17	16	45	1.86
536278--536346	36	1.9	36	96	0	129	21	21	14	42	1.89
540818--540863	23	2.0	23	82	0	56	30	23	23	21	1.99
541573--541694	63	1.9	63	89	0	190	28	19	19	31	1.97
542935--543309	37	9.5	38	77	14	323	44	8	3	43	1.52
542935--543309	75	4.8	76	75	16	284	44	8	3	43	1.52
543030--543136	50	2.2	49	89	1	160	42	9	5	42	1.60
543067--543100	13	2.7	13	90	4	52	44	11	5	38	1.65
543042--543125	25	3.4	24	72	18	73	42	9	3	44	1.54
543062--543142	25	3.2	24	69	19	67	41	9	4	43	1.59
542991--543161	88	2.0	87	89	3	265	42	9	4	43	1.59
542997--543173	86	2.0	87	85	4	241	45	9	3	40	1.55
543236--543327	44	2.1	44	84	8	116	46	3	3	46	1.35
543236--543317	44	1.9	45	85	9	118	43	3	3	48	1.38
544210--544271	29	2.1	29	90	0	97	38	8	6	46	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544436--544496	26	2.2	28	82	8	72	31	6	13	49	1.67
545346--545400	29	1.9	29	85	3	76	34	10	3	50	1.55
546325--546403	40	2.0	39	83	11	99	50	0	1	48	1.08
546318--546391	32	2.4	32	86	10	102	52	0	1	45	1.09
546315--546402	10	8.5	11	67	21	57	52	0	1	46	1.08
546387--546418	15	2.2	15	94	5	57	50	0	0	50	1.00
562987--563027	21	2.0	21	100	0	82	19	24	21	34	1.97
564081--564124	19	2.3	19	84	0	52	9	15	36	38	1.80
564113--564168	28	2.0	28	83	10	71	8	12	37	41	1.74
564362--564431	35	2.0	35	81	13	81	40	11	8	40	1.72
565625--565700	23	3.5	21	70	27	61	34	1	2	61	1.18
565636--565739	42	2.5	41	76	14	95	38	1	3	55	1.29
566864--567094	116	1.9	116	83	6	291	41	11	6	40	1.68
566985--567055	35	2.0	35	83	5	90	52	12	8	26	1.68
574480--574913	54	8.0	54	85	1	564	34	19	16	29	1.93
575238--575309	22	3.5	20	80	14	85	25	33	13	27	1.94
575242--575461	95	2.3	95	83	3	264	26	27	16	30	1.97
579390--579431	15	2.6	16	81	7	50	66	0	9	23	1.21
581128--581175	22	2.2	22	85	10	64	52	18	0	29	1.46
581550--581671	61	2.0	61	95	0	217	23	20	21	34	1.97
586740--587006	54	5.0	53	82	6	328	34	19	17	28	1.95
586760--587013	107	2.4	108	87	3	352	35	19	17	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588808--588899	32	2.9	32	77	7	98	33	17	17	31	1.93
588809--588914	31	3.4	31	79	6	106	31	17	17	33	1.94
588892--588958	30	2.2	31	83	2	82	22	17	25	34	1.96
592580--592637	20	2.7	20	81	10	62	32	18	20	27	1.97
595003--595057	22	2.7	20	81	10	74	25	30	14	29	1.95
595003--595227	96	2.4	96	83	3	276	27	24	16	32	1.96
601779--601876	9	11.0	9	73	16	55	55	2	2	40	1.23
601828--601870	3	14.0	3	81	13	52	62	2	0	34	1.08
602139--602176	20	1.9	20	88	0	58	42	18	15	23	1.89
615556--615589	16	2.1	16	94	0	59	26	2	32	38	1.71

Tables:   1   2   3   4