genome.fa.s8797.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008797.1 Hibiscus syriacus cultivar Beakdansim tig00111942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1112200

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383641--383680	2	20.0	2	100	0	80	50	0	0	50	1.00
384764--384959	67	2.9	67	95	2	349	37	17	18	26	1.93
390578--390638	31	2.0	31	90	0	95	37	8	9	44	1.68
391112--391162	18	2.9	18	78	16	54	56	0	1	41	1.10
391102--391148	17	2.5	19	73	16	53	61	0	0	38	0.96
391205--391284	12	6.7	12	71	21	69	57	1	0	41	1.07
391157--391222	23	2.8	23	79	11	71	56	1	0	42	1.08
391156--391299	60	2.4	60	88	10	222	56	2	0	41	1.11
391176--391255	37	2.2	35	86	6	106	56	1	0	42	1.07
391289--391375	5	17.4	5	90	9	142	59	0	0	40	0.97
391290--391375	19	4.6	19	92	7	149	59	0	0	40	0.97
391289--391375	36	2.5	34	94	5	156	59	0	0	40	0.97
391289--391393	12	9.2	11	76	13	70	60	0	0	39	0.97
392966--393024	22	2.9	20	85	7	66	22	20	28	28	1.98
392966--393004	20	2.0	19	90	5	60	23	20	25	30	1.98
394482--394531	21	2.3	22	83	13	68	56	26	2	16	1.51
395333--395509	44	3.8	46	76	13	166	31	20	7	40	1.80
395364--395463	52	1.9	52	84	8	132	34	17	6	43	1.73
395614--395775	40	4.1	40	97	0	306	33	26	17	22	1.96
402361--402524	44	3.5	47	82	9	192	31	21	8	38	1.83
402629--402710	40	2.0	40	95	0	146	31	28	17	23	1.96
406548--406711	23	7.6	22	78	13	137	27	18	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406548--406713	21	7.7	21	78	13	142	27	18	28	25	1.98
406548--406713	44	3.8	44	87	6	223	27	18	28	25	1.98
408798--408838	20	2.0	20	100	0	82	41	9	4	43	1.59
412468--412547	22	3.9	20	79	9	72	22	18	31	27	1.97
412468--412506	20	2.0	19	90	5	60	23	20	25	30	1.98
412490--412548	21	2.8	21	82	12	75	23	16	33	25	1.96
424196--424233	20	1.9	20	89	10	60	36	36	13	13	1.83
424449--424515	33	2.1	32	85	2	89	32	16	26	23	1.96
427520--427585	32	2.0	33	85	5	89	21	28	22	27	1.99
428202--428246	20	2.2	20	84	7	56	31	13	17	37	1.89
429243--429285	12	3.6	12	77	0	50	13	13	46	25	1.81
436914--436959	8	5.9	8	76	23	53	54	0	0	45	0.99
444278--444316	20	1.9	21	94	5	71	56	2	12	28	1.50
448284--448325	17	2.5	17	100	0	84	11	26	9	52	1.68
449539--449595	26	2.2	26	96	0	105	40	10	3	45	1.56
449912--449937	13	2.0	13	100	0	52	23	30	0	46	1.53
450503--450563	23	2.6	24	75	12	65	68	9	1	19	1.26
450619--450666	19	2.5	19	96	0	87	62	6	4	27	1.38
451088--451167	21	3.8	21	75	6	81	25	18	32	23	1.97
453043--453091	24	2.0	24	96	0	89	22	8	40	28	1.82
457842--457868	14	1.9	14	100	0	54	51	0	0	48	1.00
460268--460316	7	7.3	7	86	13	68	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460271--460313	5	9.0	5	85	14	56	41	0	0	58	0.98
460269--460315	2	26.5	2	76	23	52	42	0	0	57	0.98
464984--465052	29	2.2	30	82	15	86	37	5	15	40	1.72
464993--465052	29	2.0	31	90	6	97	36	6	15	41	1.73
481355--481397	12	3.5	12	75	6	50	46	0	0	53	1.00
481353--481407	25	2.2	25	100	0	110	50	0	0	49	1.00
486913--486972	31	1.9	32	86	3	86	50	0	3	46	1.18
488053--488110	30	1.9	30	89	3	89	24	10	18	46	1.80
490225--490387	60	2.7	60	88	1	229	39	7	12	40	1.72
494060--494208	75	2.0	75	93	1	255	31	18	8	42	1.79
494369--494421	5	10.6	5	100	0	106	18	0	41	39	1.51
494639--494743	31	3.4	31	87	1	138	12	14	36	37	1.84
494671--494721	16	3.2	16	77	5	68	7	13	41	37	1.74
495210--495247	17	2.2	18	95	4	69	26	0	0	73	0.83
495211--495246	10	3.9	10	79	20	51	27	0	0	72	0.85
507391--507448	21	2.8	21	86	0	71	18	17	32	31	1.94
523472--523528	20	3.0	20	82	12	75	54	0	0	45	0.99
523799--523974	59	3.0	59	81	11	200	42	5	19	32	1.75
523846--523931	30	2.9	29	72	16	79	40	4	19	34	1.73
524138--524203	3	22.0	3	100	0	132	33	0	0	66	0.92
526725--526859	21	6.5	21	78	10	127	31	22	22	22	1.99
526766--526838	20	3.6	20	82	10	103	35	19	21	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526745--526859	41	2.8	41	93	2	187	32	20	23	23	1.98
526977--527024	6	8.5	6	97	2	75	29	54	16	0	1.43
527636--527770	21	6.4	21	75	16	136	40	22	17	20	1.92
527657--527785	42	3.1	42	92	2	206	38	24	16	20	1.92
528028--528054	14	1.9	14	100	0	54	51	7	0	40	1.30
528242--528303	24	2.6	24	92	0	97	32	22	12	32	1.92
528760--528798	15	2.8	13	82	14	51	61	0	0	38	0.96
536224--536281	28	2.0	29	90	3	91	22	32	36	8	1.85
536488--536574	29	3.0	29	84	0	120	14	29	39	16	1.88
536905--536978	31	2.4	31	84	2	96	18	14	14	51	1.77
538678--538780	53	1.9	53	84	0	134	47	14	14	23	1.81
542887--542917	2	15.5	2	100	0	62	51	0	0	48	1.00
546152--546208	27	2.1	27	93	0	96	28	12	45	14	1.80
549648--549761	60	1.9	60	87	3	167	38	10	10	40	1.74
552222--552347	51	2.5	49	83	6	146	17	34	29	18	1.94
552359--552479	49	2.5	49	89	5	174	26	24	22	26	2.00
556044--556123	25	3.2	24	68	21	65	62	3	7	26	1.39
558177--558384	110	1.9	111	92	1	355	46	8	9	35	1.68
558641--558716	38	2.1	37	92	5	127	26	19	28	25	1.99
558708--558821	51	2.3	51	82	1	140	20	33	31	14	1.93
563516--563598	34	2.3	35	89	6	123	20	3	20	55	1.58
565098--565124	13	2.1	13	100	0	54	29	7	11	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570652--570686	2	17.5	2	100	0	70	51	0	0	48	1.00
572019--572048	6	5.0	6	95	0	51	46	0	53	0	1.00
572222--572247	8	3.2	8	100	0	52	0	50	11	38	1.39
574331--574426	31	3.1	31	79	5	106	34	21	16	27	1.95
579572--579612	21	2.0	21	95	0	73	24	17	24	34	1.96
580233--580328	31	3.1	31	81	3	113	33	21	17	27	1.96
581731--581766	9	4.2	9	89	10	58	55	0	36	8	1.30
587409--587446	20	1.9	20	88	0	58	15	13	13	57	1.65
600151--600211	6	10.2	6	96	0	95	29	49	16	4	1.66
600209--600257	5	9.8	5	93	0	62	16	36	40	6	1.73
606107--606179	6	12.2	6	100	0	146	34	49	16	0	1.46
606177--606235	5	11.8	5	94	0	73	15	37	40	6	1.74
606648--607316	4	168.2	4	97	1	1256	49	24	0	25	1.57
608072--608158	31	2.8	30	77	10	95	40	1	2	56	1.19
608220--608270	27	2.0	24	85	14	68	56	5	3	33	1.42
610927--611000	39	1.9	39	83	8	98	43	8	10	37	1.69
615229--615276	3	15.3	3	78	8	51	43	0	0	56	0.99
615223--615271	25	2.0	24	92	4	80	46	0	0	53	1.00
616148--616287	31	4.6	30	97	1	253	39	21	20	19	1.93
616148--616287	61	2.3	61	95	3	255	39	21	20	19	1.93
619221--619449	125	1.8	125	88	3	354	35	9	8	46	1.67
619918--619969	20	2.6	21	76	11	56	26	7	0	65	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624334--624365	2	16.0	2	100	0	64	50	0	0	50	1.00
626925--627148	114	2.0	114	91	3	371	34	15	20	30	1.93
629197--629358	52	3.1	52	90	1	243	40	16	19	22	1.91
630433--630892	76	6.1	76	95	1	780	21	21	21	35	1.96
631041--631085	22	2.0	22	87	8	65	46	0	0	53	1.00
632735--632963	125	1.8	125	89	3	363	35	9	8	46	1.68
635271--635340	34	2.1	34	100	0	140	34	2	30	32	1.72
640884--640938	24	2.3	24	84	3	67	49	0	1	49	1.11
642136--642389	132	1.9	134	93	2	440	40	13	9	36	1.77
648736--648783	18	2.4	21	76	16	57	64	0	0	35	0.94

Tables:   1   2   3   4   5