genome.fa.s8797.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008797.1 Hibiscus syriacus cultivar Beakdansim tig00111942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1112200

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901167--901553	186	2.1	186	84	0	506	34	24	16	25	1.95
901353--901675	120	2.7	120	89	0	475	34	23	15	26	1.95
901060--901752	306	2.3	306	84	3	897	34	25	15	24	1.95
901632--901735	32	3.2	32	67	15	95	33	26	16	23	1.95
901598--901715	34	3.5	34	70	13	109	35	24	16	22	1.95
903787--903822	18	1.9	19	88	5	56	47	2	0	50	1.15
903920--903946	14	1.9	14	100	0	54	18	7	0	74	1.05
903920--903966	23	2.0	23	84	8	60	21	6	2	70	1.20
903917--904049	26	5.0	26	72	18	80	18	7	1	72	1.15
903963--904012	20	2.5	20	84	9	59	16	12	2	70	1.26
903997--904062	5	12.6	5	78	15	71	18	3	0	78	0.87
903997--904078	11	7.5	11	85	10	98	18	3	1	76	0.99
904002--904080	21	3.6	22	88	11	101	17	5	1	75	1.04
903981--904124	11	14.2	9	75	17	83	15	6	2	75	1.10
904126--904150	2	12.5	2	100	0	50	48	0	0	52	1.00
915204--915229	12	2.2	12	100	0	52	53	0	15	30	1.42
919621--919659	17	2.4	17	95	4	71	51	5	0	43	1.24
919719--919743	11	2.3	11	100	0	50	24	0	32	44	1.54
921389--921418	2	15.0	2	100	0	60	50	0	0	50	1.00
923010--923065	3	19.0	3	75	10	53	30	3	3	62	1.29
924533--924606	28	2.6	28	80	4	87	12	17	10	59	1.60
930764--930882	36	3.4	34	79	6	114	30	20	12	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
930782--930883	36	2.9	36	82	4	129	33	19	11	35	1.88
931952--932013	28	2.2	28	86	11	83	25	14	11	48	1.77
931963--932033	28	2.5	28	81	4	81	26	14	11	47	1.77
932059--932376	40	7.5	40	70	16	194	25	31	18	24	1.98
932062--932372	129	2.4	129	95	0	541	26	30	18	24	1.98
932585--932641	3	19.3	3	75	10	55	29	3	3	63	1.28
934118--934208	29	3.1	29	74	1	74	12	15	10	61	1.57
938017--938080	21	3.0	21	88	4	101	26	23	26	23	2.00
939198--939235	16	2.4	16	83	16	53	65	0	28	5	1.14
946713--946761	16	3.1	16	100	0	98	42	18	12	26	1.85
948540--948575	2	18.0	2	100	0	72	50	0	0	50	1.00
949719--949765	24	2.0	24	84	12	62	53	6	8	31	1.57
952730--952754	12	2.1	12	100	0	50	48	20	8	24	1.76
954412--954449	19	2.0	20	84	5	51	26	2	0	71	1.00
955248--955301	21	2.6	21	100	0	108	24	16	29	29	1.97
955331--955382	21	2.5	21	81	3	61	38	19	25	17	1.93
955371--955505	20	6.7	20	80	7	121	33	24	17	24	1.96
955368--955499	61	2.2	61	87	0	183	35	24	16	23	1.95
955672--955719	22	2.3	21	89	7	71	20	39	14	25	1.91
956170--956224	25	2.2	24	78	15	58	20	9	18	52	1.71
957342--957386	18	2.5	18	88	0	72	26	44	15	13	1.83
957868--957934	20	3.4	20	81	2	73	38	23	22	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957923--958013	14	5.9	14	69	20	65	49	24	16	9	1.76
957907--958018	33	3.4	33	92	1	190	48	23	17	10	1.79
957907--957997	14	5.4	19	66	25	69	48	21	17	12	1.80
958047--958104	14	3.9	14	79	16	71	10	17	24	48	1.78
958030--958120	32	2.8	33	94	3	166	12	18	21	47	1.81
958105--958160	20	2.8	19	86	7	76	17	25	21	35	1.95
960028--960063	14	2.6	14	90	0	54	30	0	22	47	1.52
960200--960248	19	2.6	19	90	0	80	51	18	18	12	1.76
960294--960381	20	4.4	20	78	5	106	17	21	22	38	1.93
960595--960644	20	2.5	20	80	0	73	22	18	22	38	1.94
960671--960722	20	2.5	21	87	3	70	21	23	19	36	1.95
960919--960952	12	2.9	12	86	4	52	17	41	5	35	1.74
961507--961560	24	2.2	24	86	0	72	22	14	20	42	1.88
961735--961759	12	2.1	12	100	0	50	72	0	28	0	0.86
964051--964181	19	7.7	19	64	23	85	42	19	22	15	1.88
964051--964177	33	3.8	33	86	4	193	42	19	22	15	1.89
964052--964184	66	2.0	66	95	0	239	41	19	21	17	1.90
964177--964218	19	2.2	19	86	0	57	16	16	23	42	1.88
964186--964252	19	3.8	19	73	18	72	11	20	20	46	1.82
964359--964395	14	2.6	14	91	0	65	45	24	0	29	1.53
965793--965954	42	3.9	41	80	3	180	22	17	37	22	1.94
965782--965957	84	2.1	84	96	0	325	23	17	36	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
966176--966360	91	2.0	90	89	6	282	47	17	12	22	1.82
968005--968145	19	7.8	19	70	17	86	43	18	24	14	1.87
968030--968128	33	3.0	33	89	1	144	39	21	26	13	1.90
968146--968189	18	2.4	19	88	3	63	9	18	27	45	1.79
968742--968855	20	5.7	20	81	6	122	25	18	24	31	1.97
968742--968858	61	1.9	61	87	0	171	24	17	23	33	1.97
968742--968876	61	2.2	61	82	2	164	23	20	23	32	1.98
968926--968966	21	2.0	21	85	0	55	34	31	17	17	1.93
975926--975958	10	3.4	10	87	4	50	9	3	0	87	0.63
975970--976002	15	2.1	16	88	5	50	27	3	0	69	1.03
977066--977095	13	2.3	13	94	0	51	20	0	0	80	0.72
987369--988126	105	7.2	105	94	0	1300	33	25	18	22	1.96
990534--990593	29	2.0	30	87	3	86	31	0	13	55	1.39
991153--991191	16	2.4	16	82	0	51	74	0	5	20	1.01
995897--995923	2	13.5	2	100	0	54	51	0	0	48	1.00
999598--999633	3	11.7	3	94	5	63	0	33	0	66	0.92
1001633--1001675	20	2.2	20	86	0	59	32	13	18	34	1.90
1006860--1006901	20	2.1	20	86	0	57	33	9	19	38	1.84
1008349--1008408	23	2.6	23	86	0	84	18	25	20	36	1.94
1010371--1010395	12	2.1	12	100	0	50	40	0	40	20	1.52
1023068--1023104	13	2.8	13	91	4	56	27	8	29	35	1.85
1028653--1028888	33	7.5	33	73	12	174	15	8	33	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028736--1028797	31	2.0	32	84	9	83	20	8	27	43	1.80
1028784--1028848	28	2.3	28	83	0	85	12	6	40	41	1.67
1028784--1028881	28	3.4	28	73	19	83	13	7	36	42	1.71
1030897--1030990	2	50.0	2	69	12	65	48	0	0	51	1.00
1031063--1031145	36	2.3	36	93	0	139	15	42	13	28	1.85
1032136--1032292	80	2.0	80	97	0	296	35	19	15	29	1.93
1033037--1033076	15	2.7	15	96	0	71	20	27	0	52	1.46
1035787--1035877	43	2.1	43	80	8	96	51	6	3	38	1.44
1041621--1041697	38	2.0	39	82	10	95	54	1	0	44	1.08
1044508--1044565	29	2.0	29	89	0	89	13	36	27	22	1.92
1044608--1044701	14	6.4	14	84	11	125	24	38	29	7	1.83
1044693--1044767	33	2.3	33	83	4	98	28	24	38	9	1.86
1044771--1044855	29	2.9	28	93	6	143	20	30	36	12	1.90
1044926--1044982	29	2.0	29	100	0	114	19	31	35	14	1.91
1053553--1053577	2	12.5	2	100	0	50	52	0	0	48	1.00
1062723--1062802	3	26.7	3	97	0	151	33	1	0	65	1.01
1065366--1065440	38	2.0	37	84	5	98	48	4	1	46	1.29
1065581--1065605	13	1.9	13	100	0	50	72	0	8	20	1.10
1078065--1079102	518	2.0	518	93	1	1778	32	13	19	34	1.91
1096795--1096836	21	2.0	21	90	0	66	28	19	21	30	1.97
1107085--1107152	34	2.0	34	85	8	93	19	0	10	70	1.15

Tables:   1   2   3   4   5

The End!