genome.fa.s8840.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008840.1 Hibiscus syriacus cultivar Beakdansim tig00112044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1122218

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 681 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206924--206992	25	2.8	25	84	4	88	68	2	0	28	1.04
206925--206993	22	3.1	22	80	12	79	68	2	0	28	1.04
211958--212009	21	2.5	21	100	0	104	23	28	28	19	1.98
215413--218437	4	760.8	4	98	1	5897	49	0	25	24	1.51
220707--220741	17	2.1	17	88	0	52	22	0	5	71	1.07
230478--230555	31	2.5	31	89	0	111	41	1	8	48	1.43
231974--232007	18	1.9	18	88	5	52	26	29	26	17	1.98
233380--233500	21	5.8	21	77	12	133	21	20	24	33	1.97
233364--233444	44	1.9	40	90	9	126	20	22	22	34	1.97
233364--233506	42	3.5	41	82	9	143	22	20	23	33	1.97
233372--233501	63	2.1	61	89	2	206	23	20	23	33	1.98
233592--233625	12	3.1	11	91	8	52	29	52	17	0	1.45
234381--234580	21	9.8	21	71	20	147	34	25	19	22	1.96
234385--234574	42	4.7	41	88	5	255	34	25	18	22	1.96
234511--234579	36	1.9	36	100	0	138	28	28	20	21	1.98
234569--234870	41	7.3	41	65	16	131	30	20	24	25	1.99
234665--234704	21	1.9	21	94	0	71	35	30	15	20	1.93
234546--234916	124	3.0	124	95	0	670	29	20	23	25	1.99
239298--239349	18	3.0	18	69	11	54	42	3	3	50	1.39
240595--240654	22	2.6	23	75	21	63	38	3	1	56	1.26
241409--241449	16	2.6	16	92	0	64	46	9	9	34	1.70
244271--244311	10	4.1	10	80	0	55	58	19	12	9	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244274--244312	20	2.0	20	94	0	69	56	23	12	7	1.62
244588--244654	14	5.1	14	80	14	88	58	17	11	11	1.63
244590--244635	24	1.9	24	100	0	92	63	15	8	13	1.52
252790--252827	20	1.9	20	88	0	58	23	28	15	31	1.96
254144--254170	7	3.9	7	100	0	54	59	0	0	40	0.98
257028--257183	64	2.4	66	82	6	185	28	19	20	30	1.97
259857--259888	15	2.1	15	100	0	64	50	6	21	21	1.71
262606--262666	18	3.4	17	74	17	61	32	26	18	22	1.97
269464--269525	21	3.1	20	75	13	65	32	24	19	24	1.98
269448--269525	39	2.0	39	92	5	131	30	26	19	23	1.98
269458--269521	18	3.4	18	74	16	58	31	28	18	21	1.97
270438--270486	22	2.2	23	82	10	57	34	18	4	42	1.69
271987--272066	23	3.6	22	72	6	72	25	25	22	27	2.00
277039--277085	24	2.0	24	86	0	67	53	6	14	25	1.65
276883--277236	164	2.2	164	89	2	541	41	9	12	36	1.75
277853--277961	43	2.5	43	82	2	130	35	8	11	44	1.70
277699--278310	206	3.0	206	82	4	711	38	10	12	38	1.78
278108--278648	164	3.3	160	80	8	544	40	9	10	39	1.74
278594--278691	44	2.2	44	85	0	133	34	10	11	43	1.74
278447--278898	206	2.2	205	83	5	547	38	9	10	40	1.73
278800--278904	43	2.4	44	82	1	131	38	10	8	42	1.70
279151--279251	44	2.3	45	85	11	147	40	9	8	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285866--285927	20	3.0	21	76	9	65	33	33	3	29	1.74
286309--286409	33	3.0	32	83	14	139	14	40	2	41	1.61
286428--286484	2	29.0	2	96	3	107	50	0	0	49	1.00
290822--290898	36	2.1	36	85	2	100	35	19	11	33	1.88
291073--291151	29	2.7	29	94	3	133	32	16	16	34	1.91
291191--291436	77	3.3	77	83	7	301	32	15	13	39	1.86
291414--292081	39	17.3	39	83	3	778	27	16	18	37	1.92
293320--293375	21	2.6	21	80	8	60	19	0	7	73	1.06
295755--295788	15	2.3	15	89	0	50	50	0	0	50	1.00
295851--295929	35	2.3	35	91	4	126	54	7	2	35	1.42
296080--296150	31	2.3	31	85	7	99	52	14	9	23	1.71
299827--300845	345	3.0	346	98	1	1967	30	13	19	37	1.90
304736--304892	21	7.8	20	72	7	84	38	24	17	19	1.92
304859--305103	20	12.2	20	83	5	246	36	24	18	20	1.95
305814--305860	24	2.0	24	87	8	69	25	14	21	38	1.92
306035--306059	12	2.1	12	100	0	50	72	0	28	0	0.86
308189--308278	14	5.7	14	72	23	72	43	23	24	8	1.82
308181--308295	33	3.5	33	97	0	221	46	20	23	9	1.80
308203--308300	19	5.7	19	71	22	90	43	22	23	10	1.83
308319--308375	21	2.8	20	86	5	78	12	28	17	42	1.85
308673--308727	22	2.5	22	75	0	65	21	14	40	23	1.90
308874--309066	20	9.6	20	84	4	228	18	20	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308873--309188	60	5.2	60	78	7	196	19	18	25	36	1.95
309053--309135	21	4.0	21	73	6	78	25	16	24	33	1.96
309033--309131	42	2.4	43	77	11	100	21	18	23	37	1.94
318236--318308	24	3.0	24	79	0	74	24	6	15	53	1.66
322255--322313	22	2.7	22	97	0	109	33	3	16	45	1.64
323041--323095	21	2.6	21	77	8	67	32	16	14	36	1.89
326159--326236	38	2.1	38	92	0	129	33	15	19	32	1.93
326341--326410	21	3.3	21	77	0	68	28	17	14	40	1.88
328683--328722	20	2.0	21	90	5	64	42	0	0	57	0.98
329415--329447	2	16.5	2	100	0	66	48	0	0	51	1.00
329700--329773	33	2.2	34	83	9	98	51	4	2	41	1.35
330193--330239	24	2.0	24	83	8	60	59	6	4	29	1.41
338694--338769	23	3.3	23	81	0	89	19	25	25	30	1.98
338694--338785	23	4.0	23	77	5	87	19	22	25	32	1.97
342456--342542	35	2.5	34	83	12	106	55	9	8	27	1.60
344861--344899	18	2.2	18	95	4	71	64	2	0	33	1.08
352910--352949	16	2.5	16	95	0	71	62	0	2	35	1.09
352942--353003	30	2.1	30	96	0	115	33	4	0	61	1.17
352972--353058	44	2.0	43	93	2	147	39	3	0	57	1.16
355823--355948	49	2.6	49	94	1	218	26	12	19	41	1.87
356445--356849	202	2.0	202	99	0	792	44	10	7	37	1.68
361695--361746	21	2.5	21	93	0	95	44	21	15	19	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367945--368145	35	5.9	34	81	6	219	35	21	20	22	1.96
368152--369042	215	4.1	215	91	1	1419	32	15	20	31	1.94
369090--369202	56	2.0	56	84	6	149	34	17	20	27	1.95
369124--369254	55	2.3	55	82	6	147	34	17	22	25	1.96
371448--371507	30	2.0	29	96	3	111	35	3	0	61	1.12
371478--371570	43	2.2	42	94	3	161	40	4	1	53	1.27
371632--371676	17	2.6	18	82	7	65	62	0	0	37	0.96
371603--371735	41	3.0	46	73	17	136	55	2	2	39	1.25
379219--379256	20	1.9	20	89	10	60	42	0	15	42	1.47
383162--383201	11	3.5	11	84	15	55	60	2	0	37	1.11
387409--387450	18	2.3	18	87	4	57	47	19	7	26	1.74
394664--394702	20	2.0	20	89	0	60	58	15	5	20	1.55
397702--397748	24	1.9	25	86	4	69	29	21	10	38	1.87
400306--400362	22	2.5	22	81	18	73	12	15	3	68	1.34
403301--403371	6	12.5	6	85	5	51	81	8	0	9	0.87
403301--403371	12	6.2	12	77	11	60	81	8	0	9	0.87
403306--403370	18	3.6	19	81	8	73	83	9	0	7	0.82
416981--417047	22	3.0	22	84	0	80	23	22	26	26	2.00
416996--417025	15	2.0	15	93	0	51	20	23	30	26	1.98
417018--417065	15	3.3	15	70	5	53	27	22	20	29	1.99
417187--417270	2	42.5	2	81	11	102	51	1	3	44	1.26
420534--420594	21	3.2	21	61	29	55	31	6	21	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420528--420643	35	3.3	35	89	4	182	30	6	20	43	1.76
421433--421461	9	3.2	9	100	0	58	13	10	41	34	1.79
424889--424949	21	3.2	21	65	29	64	31	4	21	42	1.74
424883--424999	35	3.3	35	88	9	168	29	4	23	43	1.72
428457--428509	20	2.7	19	88	5	70	28	16	20	33	1.95
428548--428606	19	3.0	20	88	11	86	33	15	20	30	1.93
432716--432745	2	15.0	2	100	0	60	50	0	0	50	1.00
435058--435082	2	12.5	2	100	0	50	48	0	0	52	1.00
437345--437407	31	2.0	31	87	6	92	38	23	19	19	1.93
438433--438473	18	2.3	18	86	0	55	14	48	21	14	1.80

Tables:   1   2   3   4   5   6