genome.fa.s8840.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008840.1 Hibiscus syriacus cultivar Beakdansim tig00112044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1122218

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 681 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039649--1039943	32	9.4	32	72	19	219	52	12	0	34	1.42
1039616--1039755	54	2.6	54	97	1	262	52	11	0	35	1.37
1039683--1039731	22	2.2	22	85	3	62	55	12	0	32	1.37
1039616--1039920	54	5.6	54	74	17	238	52	12	0	34	1.40
1039628--1039897	133	2.0	133	95	2	490	52	13	0	34	1.40
1039737--1039864	25	5.2	23	69	20	89	53	14	0	32	1.42
1039816--1039864	22	2.2	22	85	3	62	53	16	0	30	1.43
1039859--1039958	14	6.5	14	67	18	56	54	8	1	37	1.37
1039628--1039978	133	2.6	132	86	7	421	52	12	0	35	1.42
1039923--1040010	15	5.5	15	74	18	70	50	3	1	45	1.26
1039891--1040010	52	2.4	49	86	10	158	50	5	0	42	1.32
1039995--1040064	20	3.6	20	63	7	54	45	5	0	48	1.26
1040018--1040042	10	2.5	10	100	0	50	44	0	0	56	0.99
1039966--1040033	15	4.7	14	71	12	57	45	2	0	51	1.16
1041766--1041796	2	15.5	2	100	0	62	51	48	0	0	1.00
1041796--1041829	2	17.0	2	100	0	68	50	0	0	50	1.00
1046237--1046262	2	13.0	2	100	0	52	50	0	0	50	1.00
1051729--1051796	33	2.1	33	86	5	93	27	10	1	60	1.38
1052431--1052511	33	2.5	33	100	0	162	32	2	24	40	1.68
1052448--1052504	18	3.3	18	68	22	59	33	3	24	38	1.73
1053442--1053483	21	2.0	21	95	0	75	16	40	28	14	1.88
1053829--1053932	34	3.1	34	87	5	142	31	17	28	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1056267--1056312	21	2.2	21	88	0	65	17	45	23	13	1.83
1056660--1056747	34	2.6	34	92	0	140	30	14	26	28	1.95
1059540--1059596	20	2.8	20	76	10	71	35	33	14	17	1.90
1059629--1059670	19	2.2	20	91	4	68	38	21	19	21	1.94
1059664--1059869	20	10.3	20	78	10	158	41	23	14	20	1.89
1059675--1059869	60	3.3	59	75	17	179	41	23	14	21	1.89
1059863--1059903	19	2.1	20	86	4	57	26	12	14	46	1.80
1060022--1060072	22	2.3	22	86	0	75	21	43	13	21	1.87
1060417--1060454	20	2.0	20	89	5	60	13	18	18	50	1.78
1061729--1062064	167	2.0	168	99	0	665	29	18	20	31	1.97
1062292--1062473	21	8.7	20	69	8	69	21	13	32	32	1.92
1062293--1062452	63	2.5	65	79	11	172	21	13	33	31	1.91
1062419--1062474	21	2.7	21	100	0	112	25	12	26	35	1.91
1062418--1062488	21	3.4	21	90	0	97	22	18	26	32	1.97
1062768--1062887	42	2.8	42	82	6	118	21	35	18	24	1.95
1062768--1062862	21	4.6	20	78	10	84	23	34	16	25	1.95
1064220--1064395	66	2.6	65	88	8	248	28	2	16	52	1.58
1064429--1064477	20	2.5	20	83	10	64	38	22	18	20	1.93
1067005--1067081	24	3.2	24	85	7	102	38	18	19	23	1.93
1067726--1067763	16	2.5	15	84	12	51	65	0	5	28	1.14
1067926--1067973	19	2.5	19	86	3	60	39	10	18	31	1.85
1067939--1067994	19	2.9	18	87	10	69	33	7	19	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1067997--1068065	20	3.5	20	86	4	95	18	15	24	40	1.90
1068059--1068105	20	2.3	20	92	0	76	21	17	25	36	1.94
1068362--1068426	22	3.3	22	68	28	72	43	16	18	21	1.88
1068352--1068426	37	2.0	37	97	0	141	41	20	17	21	1.90
1068573--1068619	22	2.1	23	88	4	69	46	12	10	29	1.76
1068582--1068627	22	2.1	22	87	0	65	45	13	8	32	1.73
1070923--1070992	19	3.7	18	86	7	70	14	2	7	75	1.12
1070923--1070992	9	7.4	9	84	12	70	14	2	7	75	1.12
1070923--1070992	28	2.5	28	88	2	95	14	2	7	75	1.12
1071462--1071528	27	2.4	28	97	2	127	17	13	41	26	1.87
1076319--1076454	54	2.6	52	83	3	148	44	16	11	27	1.81
1076305--1076454	51	2.8	53	79	5	160	46	15	11	26	1.79
1077504--1077542	19	2.1	19	100	0	78	30	20	15	33	1.94
1077618--1077680	20	3.0	20	90	4	90	41	9	3	46	1.52
1083522--1083573	19	2.7	19	82	5	61	38	0	1	59	1.08
1083540--1083621	38	2.3	35	80	6	83	47	2	1	48	1.22
1084248--1084275	14	2.0	14	100	0	56	14	14	14	57	1.66
1084551--1084620	13	5.8	12	73	20	58	11	8	18	61	1.54
1084552--1084615	10	5.8	10	73	20	56	12	7	18	60	1.55
1084552--1084642	23	3.9	23	81	8	121	10	9	19	59	1.59
1084599--1084629	14	2.2	14	94	0	53	3	12	25	58	1.50
1084717--1084749	16	2.1	16	94	0	57	6	9	24	60	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1084980--1085039	30	2.1	28	84	9	77	43	0	3	53	1.17
1094966--1095043	33	2.4	33	85	8	97	38	0	1	60	1.05
1095182--1095235	17	3.2	17	72	0	54	31	0	3	64	1.11
1096766--1096813	21	2.3	21	85	0	60	25	39	12	22	1.89
1096817--1096889	21	3.5	21	88	7	112	17	34	27	20	1.95
1097412--1097508	33	2.9	34	85	3	124	56	4	2	37	1.30
1097410--1097515	34	3.2	32	82	8	122	55	4	1	37	1.32
1097909--1098664	128	5.9	128	96	0	1311	31	20	24	22	1.98
1102600--1102674	33	2.3	33	97	2	143	16	25	13	45	1.83
1103371--1103428	12	5.1	12	77	12	50	31	0	3	65	1.09
1103387--1103427	21	2.0	21	90	0	64	31	0	2	65	1.05
1103554--1103578	4	6.2	4	100	0	50	28	0	0	72	0.86
1109480--1109572	41	2.2	41	90	1	141	23	19	26	30	1.98
1113142--1113228	35	2.5	34	80	12	97	54	10	8	27	1.62
1115419--1115492	28	2.5	29	80	12	80	64	4	0	31	1.12

Tables:   1   2   3   4   5   6

The End!