genome.fa.s8840.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008840.1 Hibiscus syriacus cultivar Beakdansim tig00112044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1122218

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 681 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691747--692099	42	8.3	42	89	4	483	32	24	25	17	1.97
691747--692099	126	2.8	128	89	2	541	32	24	25	17	1.97
695942--696009	27	2.6	25	80	17	75	54	0	0	45	0.99
695960--696006	13	3.5	13	81	16	60	51	0	0	48	1.00
695960--696009	27	1.9	27	88	8	77	54	0	0	46	1.00
696982--697028	24	2.0	24	95	0	85	21	21	21	36	1.96
699447--699630	14	10.8	17	68	24	104	42	19	22	15	1.89
699495--699626	34	3.9	34	86	6	198	43	18	21	15	1.88
699496--699629	67	2.0	67	95	0	241	43	19	22	14	1.87
699639--699716	33	2.3	34	88	2	122	12	23	21	42	1.87
703957--703994	16	2.4	16	82	4	51	63	0	5	31	1.17
704151--704233	11	7.3	11	70	17	53	60	2	2	34	1.23
704643--704738	35	2.6	36	86	6	131	32	14	14	38	1.87
705203--705968	109	7.4	104	79	8	701	21	20	25	33	1.97
705694--705967	98	2.8	98	83	2	381	18	21	25	33	1.96
705676--705982	98	3.1	97	78	5	366	20	20	24	34	1.96
706417--706489	37	2.0	37	83	0	92	39	8	21	30	1.83
706462--706696	103	2.3	103	80	4	244	40	13	20	25	1.89
706596--706776	65	2.8	65	93	0	308	36	12	20	30	1.89
706726--707134	36	11.9	36	69	17	271	37	13	20	28	1.91
706561--706878	167	1.9	169	93	1	550	37	12	20	29	1.89
706661--707116	102	4.5	102	94	0	781	37	12	20	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707993--708043	22	2.3	22	89	0	84	25	9	27	37	1.87
708654--708711	20	2.9	19	80	10	55	1	8	6	82	0.90
708664--708720	10	5.7	10	79	8	62	0	12	7	80	0.89
708661--708743	27	3.0	27	74	12	87	0	13	8	78	0.96
708652--708736	19	4.4	19	76	7	73	1	11	5	81	0.92
709232--709269	19	2.0	19	100	0	76	36	5	15	42	1.70
710093--710128	8	4.6	8	89	6	56	55	13	16	13	1.69
710093--710128	15	2.3	15	90	4	54	55	13	16	13	1.69
712385--712505	61	2.0	61	95	3	219	22	26	23	28	1.99
714144--714225	35	2.3	36	85	4	103	34	14	10	40	1.81
714271--714346	20	3.9	19	81	6	98	46	17	22	14	1.84
714365--714421	14	3.7	14	72	20	51	10	22	22	43	1.84
714360--714429	33	2.1	33	97	0	131	10	22	20	47	1.79
714376--714484	20	5.8	20	75	15	92	11	19	19	50	1.76
715047--715235	20	9.4	20	76	6	193	19	19	24	37	1.94
715047--715235	40	4.7	40	89	1	288	19	19	24	37	1.94
715049--715235	61	3.1	60	79	7	225	19	18	24	37	1.94
715047--715242	81	2.4	81	90	2	304	18	19	23	37	1.94
715270--715319	20	2.5	20	96	0	91	16	16	24	44	1.86
715044--715301	81	3.2	80	80	7	272	19	18	23	37	1.94
715348--715422	20	3.7	20	72	15	64	20	20	25	34	1.96
715497--715804	156	2.0	157	99	0	609	39	12	12	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719746--720796	351	3.0	350	91	2	1700	44	15	10	29	1.79
722248--722324	20	3.8	20	78	8	84	23	16	24	35	1.95
722248--722325	41	1.9	41	86	5	113	23	16	25	34	1.95
726145--726214	36	1.9	36	88	8	106	14	11	34	40	1.82
726182--726246	26	2.4	27	89	5	105	12	9	33	44	1.74
726788--726833	18	2.6	17	82	3	56	28	26	8	36	1.86
727108--727154	20	2.2	21	81	11	60	38	2	0	59	1.09
728527--728578	18	2.9	18	88	0	77	38	21	23	17	1.93
732386--732422	18	2.0	19	89	5	58	21	0	5	72	1.04
734556--734589	16	2.1	16	88	0	50	58	11	14	14	1.63
736893--736986	33	2.9	33	91	1	154	34	6	14	44	1.71
737356--737411	15	3.6	15	79	9	67	32	12	12	42	1.80
737375--737408	18	1.9	18	94	5	61	38	11	11	38	1.79
737502--737533	16	2.0	17	88	11	50	43	21	21	12	1.86
743408--743449	21	2.0	21	86	4	59	61	0	7	30	1.22
744410--744477	33	2.1	33	91	0	109	29	17	7	45	1.75
745070--745193	33	3.8	33	84	5	162	39	21	8	29	1.84
746233--746361	60	2.2	59	84	4	161	38	20	4	36	1.73
746247--746387	59	2.4	60	84	3	187	38	17	4	39	1.72
746988--747055	2	35.0	2	91	5	113	47	1	0	51	1.09
750328--750476	75	2.0	73	97	2	280	26	20	28	25	1.99
750982--751020	19	2.1	19	100	0	78	7	5	10	76	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
751947--751983	19	1.9	19	88	0	56	48	10	2	37	1.52
752908--752932	7	3.6	7	100	0	50	72	0	0	28	0.86
761262--761336	10	7.7	10	68	21	52	9	10	21	58	1.59
761268--761332	16	4.1	16	91	0	112	7	10	23	58	1.57
761402--761433	16	2.0	16	100	0	64	6	12	25	56	1.59
762746--762912	24	6.9	24	77	8	142	26	15	19	37	1.92
766903--766937	17	2.1	17	88	0	52	54	0	0	45	0.99
768024--768068	21	2.1	21	91	0	72	40	6	0	53	1.27
770605--770655	22	2.3	21	80	12	50	29	5	0	64	1.17
770755--770819	23	2.9	22	79	4	76	27	0	3	69	1.03
770746--770804	23	2.6	22	78	7	66	32	1	3	62	1.21
771302--771654	43	8.2	43	78	9	237	34	20	20	24	1.96
771328--771654	86	3.8	84	78	11	335	34	19	21	24	1.97
771331--771654	171	1.9	172	84	5	433	34	19	21	24	1.97
774570--774608	17	2.3	17	100	0	78	43	17	10	28	1.82
775551--775935	41	9.3	41	78	5	317	34	18	18	27	1.95
775555--775935	84	4.6	82	81	4	363	34	18	18	28	1.95
775540--775899	125	2.9	125	84	3	465	35	18	18	27	1.94
778687--779017	162	2.0	165	95	4	607	38	7	13	40	1.74
781155--781219	31	2.1	31	85	0	85	49	15	18	16	1.80
781792--781878	28	3.1	28	86	4	124	18	6	26	48	1.73
782174--782204	16	1.9	16	93	0	53	29	22	6	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784087--784166	34	2.5	30	80	9	88	37	6	11	45	1.65
784087--784182	30	3.1	28	74	18	75	36	6	11	45	1.65
784263--784364	28	3.5	28	79	9	114	39	10	10	39	1.75
786143--786172	2	15.0	2	100	0	60	50	0	50	0	1.00
790312--790358	20	2.4	19	79	10	51	46	2	4	46	1.34
791396--791443	24	1.9	26	84	16	66	43	4	0	52	1.20
791686--791784	52	1.9	52	97	0	189	25	20	8	46	1.77
791991--792068	32	2.4	32	82	0	93	32	11	7	48	1.68
793549--793586	20	1.9	20	100	0	76	47	0	0	52	1.00
793552--793603	22	2.4	21	78	9	59	48	0	0	51	1.00
796811--796862	25	2.1	25	85	7	70	36	26	28	7	1.84
800949--801010	21	3.0	20	86	6	88	54	3	4	37	1.38
802603--802656	15	3.8	15	80	11	69	40	0	1	57	1.09
802617--802656	9	4.4	9	87	12	55	42	0	0	57	0.98
802610--802656	18	2.8	18	87	9	64	42	0	0	57	0.98
802603--802656	6	9.0	6	80	8	56	40	0	1	57	1.09
804009--804044	15	2.5	14	86	8	54	22	0	2	75	0.94
804017--804049	15	2.2	15	100	0	66	18	0	6	75	1.00
804214--804258	22	2.0	22	86	8	63	42	0	0	57	0.98
808284--808337	3	18.0	3	84	7	74	38	0	0	61	0.96
809711--809749	19	2.0	20	85	5	53	35	0	5	58	1.20
809876--809924	23	2.2	22	85	10	64	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
821960--822530	93	6.1	93	91	2	914	27	16	20	34	1.95
821960--822530	187	3.1	187	93	0	984	27	16	20	34	1.95
821962--822530	280	2.0	280	91	3	923	27	17	20	34	1.95
822437--822864	116	3.7	115	93	1	700	33	15	20	30	1.94
823704--824095	113	3.5	113	92	0	606	37	15	18	29	1.91
823693--824220	226	2.3	226	81	6	585	38	15	17	28	1.91
824006--824308	124	2.5	123	82	5	337	43	16	17	22	1.88
824444--824497	3	18.0	3	84	7	74	38	0	0	61	0.96
824444--824497	15	3.8	15	88	11	87	38	0	0	61	0.96
826021--826065	22	2.0	22	86	8	63	42	0	0	57	0.98

Tables:   1   2   3   4   5   6