genome.fa.s8913.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008913.1 Hibiscus syriacus cultivar Beakdansim tig00112216_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  629305

Tables:   1   2   3   4   

This is table  1  of  4  ( 398 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15509--15551	19	2.3	19	95	0	77	18	20	27	32	1.96
15992--16026	16	2.2	16	89	0	52	48	5	2	42	1.41
16147--16189	19	2.3	19	95	0	77	18	20	27	32	1.96
14889--16716	638	2.9	639	96	0	3394	31	10	18	40	1.84
17093--17148	28	2.0	29	85	3	78	48	7	5	39	1.54
17562--17808	42	5.8	43	78	11	215	29	17	5	47	1.70
17623--17808	86	2.2	86	82	9	220	27	19	6	46	1.74
21732--21824	19	5.2	19	76	15	99	60	18	0	21	1.37
21758--21822	32	2.0	32	100	0	130	55	21	0	23	1.44
22093--22249	29	5.3	29	69	21	112	56	4	5	33	1.41
22067--22281	59	3.6	59	95	1	376	57	4	4	33	1.38
23126--23158	2	16.5	2	100	0	66	48	0	0	51	1.00
26423--26480	29	2.0	29	96	0	107	34	5	17	43	1.71
28729--28828	50	2.0	51	90	2	157	24	12	17	47	1.81
35277--35330	23	2.3	23	90	0	81	55	14	16	12	1.69
41728--41758	15	2.1	15	93	0	53	54	0	0	45	0.99
51434--51490	28	2.0	28	86	0	78	33	17	17	31	1.93
54082--54115	16	2.1	16	89	10	52	47	8	5	38	1.59
54507--54670	45	3.7	45	84	8	201	38	7	16	37	1.77
54781--54950	58	2.9	57	82	3	196	37	9	11	42	1.73
55005--55118	39	2.9	38	75	8	122	38	6	12	42	1.67
55136--55257	39	3.0	42	80	12	155	34	2	11	51	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54961--55495	139	3.9	135	78	8	499	37	7	10	44	1.67
55275--55363	40	2.2	39	86	9	117	34	10	11	43	1.74
55288--55375	40	2.2	40	85	6	115	43	7	9	39	1.66
61217--61309	23	4.1	23	75	6	75	19	21	26	32	1.97
61274--61330	23	2.5	23	85	2	80	24	19	24	31	1.98
61480--61513	17	2.0	17	88	0	50	35	5	14	44	1.70
67064--67118	28	1.9	29	96	3	103	45	7	14	32	1.72
67951--67987	19	2.1	18	90	10	58	10	32	5	51	1.60
69827--69881	21	2.6	21	97	0	101	20	10	9	60	1.57
74693--74720	4	7.0	4	100	0	56	25	25	0	50	1.50
83952--84058	55	1.9	55	92	0	178	48	4	14	32	1.64
85304--85413	51	2.2	51	85	3	141	37	10	22	30	1.87
87040--87133	40	2.3	40	82	7	136	52	0	0	47	1.00
96626--96716	37	2.3	37	83	12	103	71	2	9	16	1.23
96669--96731	27	2.3	27	78	5	65	73	3	9	14	1.21
97722--97765	3	14.7	3	82	17	56	63	0	0	36	0.95
97722--97765	17	2.6	18	82	17	58	63	0	0	36	0.95
97723--97765	22	2.0	22	90	9	70	62	0	0	37	0.95
97725--97775	23	2.3	23	83	10	61	64	0	1	33	1.05
97930--97982	21	2.5	21	81	6	72	20	26	18	33	1.96
97972--98044	21	3.5	21	83	1	85	39	15	23	21	1.91
98012--98139	41	3.2	39	81	7	130	32	26	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98034--98139	20	5.2	20	85	6	142	30	29	17	22	1.97
98334--98377	22	2.0	22	95	0	79	20	45	15	18	1.85
98640--98698	20	3.0	20	87	0	73	15	18	22	44	1.87
98835--98889	25	2.2	24	81	9	65	20	7	18	54	1.66
100018--100065	18	2.7	18	93	0	87	27	45	12	14	1.81
100617--100661	20	2.3	18	85	14	63	40	15	24	20	1.91
100625--100718	19	5.2	19	77	13	99	46	18	20	14	1.83
100732--100786	20	2.8	20	94	2	94	16	29	23	30	1.96
101161--101229	21	3.3	20	74	6	66	24	40	15	18	1.90
101151--101241	41	2.2	42	88	2	139	21	41	15	20	1.89
102649--102687	14	2.8	14	84	0	51	35	0	17	46	1.49
102827--102891	19	3.7	19	80	15	86	47	18	20	13	1.82
102910--102985	20	3.8	20	94	0	116	15	22	21	40	1.90
102900--103001	40	2.8	34	75	13	96	14	24	22	38	1.92
103208--103291	20	4.2	20	90	0	132	30	19	26	23	1.98
103927--103970	18	2.4	18	88	0	70	43	27	4	25	1.74
104077--104125	20	2.6	19	78	9	55	40	24	0	34	1.55
106356--106410	22	2.7	20	78	10	56	47	20	7	25	1.75
111344--111447	36	2.8	37	85	2	147	39	15	15	29	1.88
115921--115960	20	2.0	21	85	5	55	82	7	7	2	0.92
116564--116640	22	3.5	22	90	0	127	36	28	14	20	1.92
117486--118403	106	8.7	106	92	0	1435	33	24	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119120--119223	36	2.8	37	83	2	138	39	15	14	30	1.87
127230--127508	5	56.0	5	98	0	524	60	38	0	1	1.04
131427--131471	3	15.3	3	86	4	65	35	4	0	60	1.17
131683--131730	21	2.3	21	85	3	62	41	14	22	20	1.89
131683--131895	41	5.2	41	73	11	123	34	18	19	27	1.95
131740--131810	21	3.5	20	80	3	88	19	22	18	39	1.92
131740--131810	20	3.5	20	82	3	79	19	22	18	39	1.92
131802--131913	20	5.6	20	84	4	127	37	19	19	23	1.94
132428--132498	19	3.7	19	83	9	90	46	23	18	11	1.81
132494--132686	19	11.1	19	67	24	113	12	22	20	44	1.85
132516--132604	14	5.6	14	71	23	70	10	23	22	43	1.83
132499--132686	33	5.5	33	86	7	252	12	22	20	45	1.84
132640--132686	20	2.3	20	82	13	69	12	23	14	48	1.78
134837--134903	21	3.2	21	66	6	55	25	35	19	19	1.95
136254--136289	14	2.6	14	95	0	63	30	0	25	44	1.54
136396--136520	19	7.4	19	69	26	102	46	20	19	14	1.84
136396--136521	33	3.8	33	93	2	200	46	20	19	14	1.84
136492--136537	19	2.4	19	88	0	65	47	23	13	15	1.80
136533--136683	19	8.7	19	65	21	89	13	23	19	43	1.86
136537--136663	33	3.8	33	96	0	227	12	23	18	44	1.84
136558--136645	14	5.6	14	69	23	50	12	23	19	44	1.85
138992--139016	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139191--139244	24	2.2	24	86	0	72	42	20	14	22	1.88
140048--140126	20	3.9	20	77	9	70	35	22	18	22	1.96
140086--140135	20	2.5	20	80	0	73	38	22	18	22	1.94
140349--140436	20	4.4	20	82	5	124	38	23	22	14	1.92
140482--140526	19	2.4	19	96	0	81	15	17	17	48	1.81
142116--142206	42	2.2	42	84	3	123	23	15	39	21	1.91
142142--142202	21	3.0	20	76	7	68	24	13	39	22	1.90
142547--142585	20	2.0	20	94	0	69	33	28	12	25	1.93
142573--142648	20	3.8	20	80	1	91	35	19	25	19	1.95
142632--142690	19	3.4	19	73	22	74	47	20	18	13	1.82
142648--142706	14	3.9	14	76	20	64	49	23	16	10	1.77
142632--142711	33	2.4	33	97	0	151	47	22	18	11	1.80
142718--142814	19	5.6	18	67	22	66	12	18	21	47	1.81
142740--142798	14	3.9	14	72	20	55	10	15	23	50	1.74
142723--142814	33	2.8	33	91	0	157	11	17	21	48	1.79
142799--142842	20	2.2	20	88	4	63	18	25	20	36	1.95
142809--142853	20	2.2	20	84	0	54	15	24	26	33	1.95
143390--143430	18	2.3	18	95	0	73	14	9	46	29	1.77
145264--145317	18	2.9	18	81	5	63	24	12	29	33	1.92
145252--145315	19	3.4	19	80	6	76	25	14	31	29	1.94
145303--145343	20	2.0	21	90	4	66	17	14	21	46	1.84
145613--145649	9	4.1	9	92	0	65	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145613--145647	3	11.7	3	87	0	52	25	0	0	74	0.82
148505--148561	21	2.7	21	94	0	96	28	29	17	24	1.97
151628--151659	16	2.1	16	94	5	57	78	9	0	12	0.97
151935--151964	2	15.5	2	93	6	53	53	0	0	46	1.00
152148--152213	15	4.3	15	73	17	64	56	3	1	39	1.24
152153--152211	2	30.5	2	78	13	61	52	3	1	42	1.28
152227--152260	15	2.3	15	89	0	50	85	0	8	5	0.75
154187--155018	85	9.8	85	84	2	992	24	18	22	34	1.96
154270--155106	256	3.2	254	84	4	1052	24	18	22	34	1.96
154279--155018	341	2.2	338	87	1	1052	23	18	22	34	1.96

Tables:   1   2   3   4